Pre_GI: BLASTP Hits

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Query: NC_013716:5201097:5269167 Citrobacter rodentium ICC168, complete genome

Start: 5269167, End: 5269469, Length: 303

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf18e-41165
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf18e-41165
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-40164
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-39161
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase1e-38158
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase2e-37154
NC_008253:4735418:477367147736714773937267Escherichia coli 536, complete genomehypothetical protein4e-34142
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein1e-25114
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase4e-2199.8
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-0961.6
NC_010660:33109:373143731437610297Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence4e-0960.1
NC_013008:3911356:391361239136123914286675Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-0858.9
NC_011353:3956630:395888639588863959560675Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISSfl4 ORF11e-0858.9
NC_002695:3852233:385448938544893855163675Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-0858.9
NC_002655:3919545:392180139218013922475675Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc81e-0858.9
NC_013941:3676146:367840236784023679076675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISSfl3 OrfA1e-0858.9
NC_004337:3590323:385190438519043852578675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF11e-0858.9
NC_004851:157675:173438173438174112675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF11e-0858.9
NC_008258:401786:423776423776424450675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF19e-0958.9
NC_008258:2045000:205991720599172060591675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF19e-0958.9
NC_004337:367687:386125386125386799675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF19e-0958.9
NC_017319:155958:169634169634170308675Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF19e-0958.9
NC_017328:385552:403989403989404663675Shigella flexneri 2002017 chromosome, complete genomeISSfl4 ORF19e-0958.9
NC_004851:157675:169705169705170379675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF18e-0958.9
AP010958:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-0858.5
AP010958:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-0858.5
NC_011601:3338888:334114433411443341818675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6831e-0858.5
NC_013353:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-0858.5
NC_013353:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-0858.5
NC_007607:87000:116076116076116663588Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceISSfl4 ORF11e-0755.1
NC_017319:155958:173413173413174042630Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF12e-0754.3
NC_012587:2298324:2314945231494523164951551Rhizobium sp. NGR234, complete genomeputative transposase number 1 for insertion sequence NGRIS-3g8e-0649.3
NC_000914:198000:2184582184582200081551Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceY4kJ8e-0649.3
NC_012586:922095:9243909243909259401551Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase number 1 for insertion sequence NGRIS-3e8e-0649.3