Pre_GI: BLASTP Hits

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Query: NC_013716:5201097:5232615 Citrobacter rodentium ICC168, complete genome

Start: 5232615, End: 5232827, Length: 213

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:3409389:348569434856943485918225Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein7e-25112
NC_015663:1869000:188221118822111882414204Enterobacter aerogenes KCTC 2190 chromosome, complete genomegene expression modulator5e-1993.2
NC_011751:3453683:350879835087983508938141Escherichia coli UMN026 chromosome, complete genome4e-1890.1
NC_017319:192482:207702207702207911210Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceputative regulator5e-1889.7
NC_007608:97092:110679110679110888210Shigella boydii Sb227 plasmid pSB4_227, complete sequenceputative regulator5e-1889.7
NC_011749:34056:533085330853517210Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehemolysin expression-modulating protein hmo1e-1788.6
NC_010660:175200:190710190710190916207Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein3e-1787
NC_004431:279868:285015285015285155141Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein1e-1685.1
AP010958:3627355:365865536586553658843189Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative regulator Hha-homolog4e-1683.6
NC_013353:3627355:365865536586553658843189Escherichia coli O103:H2 str. 12009, complete genomeregulator Hha-homolog4e-1683.6
NC_013941:3676146:370684037068403707028189Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1683.6
NC_012880:1127997:115129411512941151497204Dickeya dadantii Ech703, complete genomeHemolysin expression modulating family protein6e-1682.8
NC_016893:218376:224256224256224459204Wigglesworthia glossinidia endosymbiont of Glossina morsitanshemolysin expression modulating protein6e-1682.8
NC_004344:589375:607573607573607776204Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein8e-1682.4
NC_015567:1127780:115196511519651152168204Serratia sp. AS9 chromosome, complete genomehemolysin expression modulating family protein1e-1581.6
NC_015566:1127595:115178011517801151983204Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein1e-1581.6
NC_007713:1:228222822494213Sodalis glossinidius str. 'morsitans' plasmid pSG1, completeputative regulatory protein3e-1477
NC_007607:87000:104623104623104811189Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative regulator3e-0857.4