Pre_GI: BLASTP Hits

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Query: NC_013716:5201097:5231050 Citrobacter rodentium ICC168, complete genome

Start: 5231050, End: 5231649, Length: 600

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013592:446092:462187462187462762576Dickeya dadantii Ech586, complete genomehypothetical protein1e-28125
NC_014618:4114004:413407641340764134648573Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein8e-24110
NC_014618:4114004:413477241347724135305534Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein6e-0857.4
NC_013961:441719:463240463240463590351Erwinia amylovora, complete genomehypothetical protein9e-0650.1
NC_008253:3161311:316278631627863163388603Escherichia coli 536, complete genomehypothetical protein7e-24110
NC_004431:279868:281863281863282471609Escherichia coli CFT073, complete genomehypothetical protein3e-23108
NC_004431:3409389:348706634870663487665600Escherichia coli CFT073, complete genomehypothetical protein9e-103372
AP010958:5272863:528213052821305282723594Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-22104
NC_013353:5272863:528213052821305282723594Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-22104
NC_013941:3676146:370804437080443708646603Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-24110
NC_011751:3453683:351015535101553510754600Escherichia coli UMN026 chromosome, complete genomehypothetical protein9e-103372
NC_013421:1505176:150959415095941510127534Pectobacterium wasabiae WPP163, complete genomehypothetical protein2e-0962.4
NC_017328:3088907:312270431227043123276573Shigella flexneri 2002017 chromosome, complete genomehypothetical protein7e-98356
NC_004741:3041294:307383030738303074402573Shigella flexneri 2a str. 2457T, complete genomehypothetical protein7e-98356
NC_004337:3049118:308300030830003083572573Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-98356
NC_009708:915814:923029923029923625597Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-23108