Pre_GI: BLASTP Hits

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Query: NC_013716:5201097:5201097 Citrobacter rodentium ICC168, complete genome

Start: 5201097, End: 5202830, Length: 1734

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:3020000:3038606303860630403391734Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Single-stranded-DNA-specific exonuclease recJ01068
NC_014121:4299500:4328830432883043305631734Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completessDNA exonuclease RecJ01038
NC_011283:785973:7859737859737877061734Klebsiella pneumoniae 342 chromosome, complete genomessDNA exonuclease RecJ01032
NC_016612:477407:5050595050595067921734Klebsiella oxytoca KCTC 1686 chromosome, complete genomessDNA exonuclease RecJ01012
NC_020260:440000:4407364407364424691734Cronobacter sakazakii Sp291, complete genomessDNA exonuclease RecJ0965
NC_020064:3825916:3841250384125038429801731Serratia marcescens FGI94, complete genomesingle-stranded-DNA-specific exonuclease RecJ0898
NC_012912:3853377:3893600389360038953301731Dickeya zeae Ech1591, complete genomesingle-stranded-DNA-specific exonuclease RecJ0862
NC_016818:859181:8608928608928626251734Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ0853
NC_012779:3176820:3224869322486932265961728Edwardsiella ictaluri 93-146, complete genomesingle-stranded-DNA-specific exonuclease RecJ, putative0806
NC_009348:1064664:1067638106763810693681731Aeromonas salmonicida subsp. salmonicida A449, complete genomeRecJ single-stranded-DNA-specific exonuclease0647
NC_007492:1193626:1199011119901112007201710Pseudomonas fluorescens PfO-1, complete genomeRecJ exonuclease0635
NC_002977:652481:6648106648106666091800Methylococcus capsulatus str. Bath, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-147522
NC_008260:1885969:1886605188660518883291725Alcanivorax borkumensis SK2, complete genomeSingle-stranded-DNA-specific exonuclease RecJ2e-141503
NC_008344:49039:1293821293821311511770Nitrosomonas eutropha C91, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-138493
NC_010531:428000:4317524317524335571806Polynucleobacter necessarius STIR1, complete genomesingle-stranded-DNA-specific exonuclease RecJ9e-133474
NC_013355:105500:1165171165171182771761Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-79296
NC_016627:3205333:3242883324288332453572475Clostridium clariflavum DSM 19732 chromosome, complete genomeexonuclease RecJ2e-79296
NC_018145:104303:1153891153891171491761Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ3e-79296
NC_013173:3132517:3132517313251731342411725Desulfomicrobium baculatum DSM 4028, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-78294
NC_010382:3783879:3790881379088137932022322Lysinibacillus sphaericus C3-41, complete genomesingle-stranded-DNA-specific exonuclease recJ2e-77290
NC_012796:3600630:3686202368620236879021701Desulfovibrio magneticus RS-1, complete genomesingle-stranded-DNA-specific exonuclease4e-77289
NC_013132:8732093:8754209875420987559151707Chitinophaga pinensis DSM 2588, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-76286
NC_004663:5099845:5114434511443451161521719Bacteroides thetaiotaomicron VPI-5482, complete genomesingle-stranded-DNA-specific exonuclease recJ1e-71271
NC_015722:852000:8636808636808655001821Candidatus Midichloria mitochondrii IricVA chromosome, completesingle-stranded-DNA-specific exonuclease RecJ2e-71270
NC_019892:7734519:7753963775396377557291767Singulisphaera acidiphila DSM 18658 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-70268
NC_008380:2210649:2210649221064922124091761Rhizobium leguminosarum bv. viciae 3841, complete genomeputative single-stranded-DNA-specific exonuclease1e-70268
NC_015703:4417342:4440587444058744423321746Runella slithyformis DSM 19594 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ8e-71268
NC_013515:65822:8413584135867862652Streptobacillus moniliformis DSM 12112, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-70267
NC_015144:1333179:1356733135673313584391707Weeksella virosa DSM 16922 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-70267
NC_013223:343344:3615003615003632331734Desulfohalobium retbaense DSM 5692, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-70266
NC_017025:283182:2857772857772874651689Flavobacterium indicum GPTSA100-9, complete genomessDNA-specific exonuclease RecJ1e-69264
NC_016584:954000:9651999651999669621764Desulfosporosinus orientis DSM 765 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-69263
NC_018664:1795223:1812172181217218139111740Clostridium acidurici 9a chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ3e-69263
NC_003911:1791878:1849853184985318515081656Silicibacter pomeroyi DSS-3, complete genomesingle-stranded-DNA-specific exonuclease RecJ5e-69262
NC_016584:954000:9789319789319810332103Desulfosporosinus orientis DSM 765 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ9e-69261
NC_011725:4373721:4386541438654143888802340Bacillus cereus B4264 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-68260
NC_004722:4333643:4343306434330643456452340Bacillus cereus ATCC 14579, complete genomeSingle-stranded-DNA-specific exonuclease recJ1e-67257
NC_007940:322948:3363083363083380651758Rickettsia bellii RML369-C, complete genomeSingle-stranded-DNA-specific exonuclease RecJ9e-66251
NC_008593:1513107:1513107151310715148731767Clostridium novyi NT, complete genomesingle-stranded-DNA-specific exonuclease RecJ6e-65249
NC_009883:1197500:1209741120974112114981758Rickettsia bellii OSU 85-389, complete genomeSingle-stranded-DNA-specific exonuclease RecJ4e-65249
NC_015425:1687050:1689171168917116908471677Clostridium botulinum BKT015925 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ3e-65249
NC_009952:2381601:2398150239815023999071758Dinoroseobacter shibae DFL 12, complete genomesingle-stranded-DNA-specific exonuclease5e-64245
NC_003366:2356148:2361959236195923637371779Clostridium perfringens str. 13, complete genomeprobable single-strand DNA-specific exonuclease2e-63244
NC_008262:2242432:2248456224845622502341779Clostridium perfringens SM101, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-63244
NC_010571:4483500:4503483450348345052041722Opitutus terrae PB90-1, complete genomesingle-stranded-DNA-specific exonuclease RecJ5e-63242
NC_009839:30409:3427434274358451572Campylobacter jejuni subsp. jejuni 81116, complete genomeputative single-stranded-DNA-specific exonuclease1e-62241
NC_017281:30261:3412734127356981572Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomeSingle-stranded-DNA-specific exonuclease recJ2e-62241
NC_003912:30265:3413134131357021572Campylobacter jejuni RM1221, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-62241
NC_002163:29726:3600036000375711572Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative single-stranded-DNA-specific exonuclease2e-62241
NC_009707:36024:3602436024375951572Campylobacter jejuni subsp. doylei 269.97 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ1e-62241
NC_017280:30388:3425434254358251572Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-62241
NC_014802:27857:3413034130357011572Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ1e-62241
NC_017279:29737:3601136011375821572Campylobacter jejuni subsp. jejuni IA3902 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ1e-62241
NC_009428:833701:8490658490658508161752Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-62241
NC_008787:31999:3586535865374361572Campylobacter jejuni subsp. jejuni 81-176, complete genomesingle-stranded-DNA-specific exonuclease RecJ8e-63241
NC_020541:1786500:181273318127331813587855Rhodanobacter sp. 2APBS1, complete genome1e-61238
NC_016931:773871:7769837769837787461764Rickettsia massiliae str. AZT80 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ9e-62238
NC_020541:1786500:178945217894521790324873Rhodanobacter sp. 2APBS1, complete genomesingle-stranded DNA-specific exonuclease5e-61235
NC_008347:1636660:1657225165722516590361812Maricaulis maris MCS10, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-60233
NC_015186:1504275:1518611151861115203951785Acidiphilium multivorum AIU301, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-59231
NC_009484:1434000:1448420144842014502041785Acidiphilium cryptum JF-5 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ8e-60231
NC_008343:1548020:1548020154802015498701851Granulibacter bethesdensis CGDNIH1, complete genomesingle-stranded-DNA-specific exonuclease recJ2e-59230
NC_011126:1241655:1245364124536412470371674Hydrogenobaculum sp. Y04AAS1, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-59229
NC_015428:823420:8248118248118271412331Lactobacillus buchneri NRRL B-30929 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-59229
NC_020411:1232962:1236691123669112383641674Hydrogenobaculum sp. HO, complete genomeexonuclease RecJ4e-59229
NC_015557:1232772:1236502123650212381751674Hydrogenobaculum sp. 3684 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-59229
NC_015587:1232642:1236372123637212380451674Hydrogenobaculum sp. SHO chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ4e-59229
NC_007109:808331:8184768184768202391764Rickettsia felis URRWXCal2, complete genomeSingle-stranded-DNA-specific exonuclease RecJ3e-59229
NC_009715:1923676:1946028194602819476051578Campylobacter curvus 525.92 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ2e-58227
NC_009714:113975:1139751139751155491575Campylobacter hominis ATCC BAA-381, complete genomesingle-stranded-DNA-specific exonuclease RecJ3e-56220
NC_013517:2437574:2448594244859424502761683Sebaldella termitidis ATCC 33386, complete genomesingle-stranded-DNA-specific exonuclease RecJ6e-56219
NC_008819:936929:9561959561959580841890Prochlorococcus marinus str. NATL1A, complete genomeDHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease2e-55217
NC_007335:331072:3521133521133539811869Prochlorococcus marinus str. NATL2A, complete genomeRecJ exonuclease5e-54212
NC_020541:1786500:1796436179643617982201785Rhodanobacter sp. 2APBS1, complete genomesingle-stranded DNA-specific exonuclease2e-50201
NC_018644:1263891:1281174128117412828621689Alpha proteobacterium HIMB59 chromosome, complete genomeDHHA1 domain-containing protein,DHH family protein5e-44179
NC_015682:379373:3979463979463996251680Thermodesulfobacterium sp. OPB45 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ8e-44178
NC_015660:3174424:3180431318043131820921662Geobacillus thermoglucosidasius C56-YS93 chromosome, completesingle-stranded-DNA-specific exonuclease RecJ5e-43176
NC_006510:591339:6181686181686198291662Geobacillus kaustophilus HTA426, complete genomesingle strand DNAspecific exonuclease1e-42175
NC_016593:596500:6279096279096295701662Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completessDNA-specific exonuclease RecJ2e-42174
NC_013894:1380564:1408542140854214101791638Thermocrinis albus DSM 14484 chromosome, complete genomephosphoesterase RecJ domain protein3e-36153
NC_015499:197945:2128282128282145071680Thermodesulfobium narugense DSM 14796 chromosome, complete genomephosphoesterase RecJ domain protein2e-33144
NC_014328:3682000:368640436864043687252849Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative single-stranded-DNA-specific exonuclease RecJ5e-26119
NC_015578:3309531:3326382332638233285262145Treponema primitia ZAS-2 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ6e-25115
NC_014150:1523108:1542221154222115443802160Brachyspira murdochii DSM 12563 chromosome, complete genomesingle-stranded-DNA-specific exonuclease RecJ1e-20102
NC_017268:747429:7698207698207719402121Treponema pallidum subsp. pallidum str. Chicago chromosome,single-stranded-DNA-specific exonuclease RecJ1e-20101
NC_006958:1819944:1833657183365718355191863Corynebacterium glutamicum ATCC 13032, complete genomeSINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE2e-20100
NC_003450:1817821:1832185183218518340471863Corynebacterium glutamicum ATCC 13032, complete genomesingle-stranded DNA-specific exonuclease2e-20100
NC_015714:741044:7634507634507655702121Treponema paraluiscuniculi Cuniculi A chromosome, complete genomesingle-stranded-DNA-specific exonuclease2e-20100
NC_000964:2146000:2178722217872221804521731Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-1480.9
NC_017190:2130651:2172866217286621745961731Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived single-strand DNA-specific exonuclease yorK4e-1480.1
NC_017191:1173989:1287811128781112894991689Bacillus amyloliquefaciens XH7 chromosome, complete genomess-DNA-specific endonuclease4e-1376.6
NC_017188:1172181:1286234128623412879221689Bacillus amyloliquefaciens TA208 chromosome, complete genomessDNA-binding protein4e-1376.6