Pre_GI: BLASTP Hits

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Query: NC_013716:4728500:4733292 Citrobacter rodentium ICC168, complete genome

Start: 4733292, End: 4735715, Length: 2424

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007946:3683371:3684988368498836876902703Escherichia coli UTI89, complete genomeprobable bifunctional chitinase/lysozyme0843
NC_013716:4728500:4736113473611347383382226Citrobacter rodentium ICC168, complete genomeputative polysaccharide degrading enzyme5e-78293
NC_007434:2290934:2305739230573923071001362Burkholderia pseudomallei 1710b chromosome I, complete sequenceglycosyl hydrolase, family 183e-49197
NC_015061:3725921:3736946373694637398132868Rahnella sp. Y9602 chromosome, complete genomeglycoside hydrolase family 186e-49196
NC_017047:3793000:3801607380160738044742868Rahnella aquatilis HX2 chromosome, complete genomeglycoside hydrolase6e-49196
NC_018531:3679978:3691325369132536929351611Arthrobacter sp. Rue61a chromosome, complete genomefamily 182e-46187
NC_008711:3520515:3536614353661435381731560Arthrobacter aurescens TC1, complete genomeputative glycosyl hydrolase family protein2e-46187
NC_014310:279912:3047473047473059041158Ralstonia solanacearum PSI07 megaplasmid, complete sequenceglycosyl hydrolase family protein2e-46187
NC_012914:569471:6121916121916137891599Paenibacillus sp. JDR-2, complete genomeChitinase2e-43177
NC_003888:4927170:4969766496976649707701005Streptomyces coelicolor A3(2), complete genomehydrolase5e-38160
NC_012779:2064582:2082362208236220862553894Edwardsiella ictaluri 93-146, complete genomefibronectin type III domain protein2e-34148
NC_016109:327826:3353683353683367531386Kitasatospora setae KM-6054, complete genomehypothetical protein1e-32142
NC_013947:4695000:4700098470009847011141017Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-20102