Pre_GI: BLASTP Hits

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Query: NC_013716:357928:364176 Citrobacter rodentium ICC168, complete genome

Start: 364176, End: 365051, Length: 876

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:3669500:371359537135953714470876Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector OspB-homolog3e-106384
AP010958:3669500:371359537135953714470876Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector OspB-homolog3e-106384
NC_013361:5319497:532970953297095330287579Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector OspB1e-57223
NC_011147:1239904:125073912507391251623885Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-34145
NC_006511:1243817:125689612568961257780885Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-34145
NC_004605:1385444:145309314530931453980888Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative OspB protein1e-31137