Pre_GI: BLASTP Hits

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Query: NC_013716:3512950:3549759 Citrobacter rodentium ICC168, complete genome

Start: 3549759, End: 3550055, Length: 297

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:4677412:469231746923174692622306Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transcriptionl regulator HipB1e-32137
NC_009838:81913:117517117517117816300Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceputative transcriptional regulator1e-31135
CU928145:3983432:399268139926813993010330Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator1e-31134
NC_011748:3983432:399268139926813993010330Escherichia coli 55989, complete genomeputative transcriptional regulator1e-31134
NC_009838:81913:860388603886334297Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencehypothetical protein7e-30129
NC_007953:1434705:143943014394301439951522Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, XRE family1e-1995.5
NC_015138:5046921:505157250515725051982411Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehelix-turn-helix domain-containing protein8e-0855.8