Pre_GI: BLASTP Hits

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Query: NC_013716:3512950:3538552 Citrobacter rodentium ICC168, complete genome

Start: 3538552, End: 3539238, Length: 687

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012667:931390:962795962795963523729Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein3e-46184
NC_002506:370629:422784422784423452669Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein5e-46184
NC_009456:787322:812261812261812929669Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein5e-46184
NC_012583:440420:451013451013451681669Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein5e-46184
NC_016945:370471:422588422588423271684Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein4e-46184
NC_016446:119914:123274123274123993720Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein4e-46184
NC_009792:3245368:324622732462273246682456Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-41166
NC_002950:879930:881310881310881990681Porphyromonas gingivalis W83, complete genomehypothetical protein2e-25115
NC_002950:1511955:153367215336721534352681Porphyromonas gingivalis W83, complete genomehypothetical protein2e-25115
NC_002937:2933000:294428429442842944985702Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehypothetical protein6e-23107