Pre_GI: BLASTP Hits

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Query: NC_013716:3512950:3521977 Citrobacter rodentium ICC168, complete genome

Start: 3521977, End: 3523593, Length: 1617

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008751:1043269:1053152105315210549391788Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomerestriction modification system DNA specificity domain1e-40167
NC_019977:302454:3096423096423111471506Methanomethylovorans hollandica DSM 15978, complete genomerestriction endonuclease S subunit2e-31137
NC_011138:3881446:3898916389891638999981083Alteromonas macleodii 'Deep ecotype', complete genometype I site-specific deoxyribonuclease1e-22108
NC_012759:4501206:4516575451657545179691395Escherichia coli BW2952 chromosome, complete genomeEcoKI restriction-modification system protein HsdS3e-22107
AC_000091:4569379:4584748458474845861421395Escherichia coli W3110 DNA, complete genomespecificity determinant for hsdM and hsdR3e-22107
NC_018876:1061682:1092892109289210942621371Methanolobus psychrophilus R15 chromosome, complete genomehsdS2e-21104
NC_013203:1351941:1375039137503913764181380Atopobium parvulum DSM 20469, complete genomehypothetical protein7e-1995.9
NC_009439:608500:6145236145236157701248Pseudomonas mendocina ymp, complete genomerestriction modification system DNA specificity subunit2e-1894.7
NC_010498:4856011:4859524485952448608101287Escherichia coli SMS-3-5, complete genometype I restriction modification DNA specificity domain-containing protein1e-1792
NC_016803:593484:6016666016666031651500Desulfovibrio desulfuricans ND132 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1791.3
NC_010814:1441327:1458977145897714603201344Geobacter lovleyi SZ, complete genomerestriction modification system DNA specificity domain2e-1790.9
NC_015136:2021799:2033188203318820345191332Burkholderia sp. CCGE1001 chromosome 1, complete sequencerestriction modification system DNA specificity domain-containing protein5e-1789.7
NC_008705:4053070:4064342406434240656011260Mycobacterium sp. KMS, complete genomerestriction endonuclease S subunits-like protein3e-1687
NC_008146:4019711:4029860402986040311191260Mycobacterium sp. MCS, complete genomeRestriction endonuclease S subunits-like protein3e-1687
NC_011832:913994:9247349247349261491416Candidatus Methanosphaerula palustris E1-9c, complete genomerestriction modification system DNA specificity domain protein9e-1685.5
NC_014365:2810405:2832411283241128336461236Desulfarculus baarsii DSM 2075 chromosome, complete genomerestriction modification system DNA specificity domain protein1e-1481.6
NC_011083:4547825:4598267459826745994091143Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,restriction modification system DNA specificity domain2e-1480.9
NC_013440:3813132:3832106383210638333771272Haliangium ochraceum DSM 14365, complete genomerestriction modification system DNA specificity domain protein6e-1479.7
NC_016147:2337244:2348124234812423492871164Pseudoxanthomonas spadix BD-a59 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-1479.7
NC_015562:755785:7636407636407649591320Methanotorris igneus Kol 5 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-1479.7
NC_015125:1668780:1680807168080716819851179Microbacterium testaceum StLB037, complete genomerestriction endonuclease S subunits2e-1377.8
NC_018691:3437821:3449748344974834512081461Alcanivorax dieselolei B5 chromosome, complete genomeRestriction modification system DNA specificity domain protein2e-1377.8
NC_016027:1902854:1926268192626819274581191Gluconacetobacter xylinus NBRC 3288, complete genometype I DNA specificity S subunit4e-1376.6
NC_016147:1961000:197630919763091977286978Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeRestriction endonuclease S subunits-like protein4e-1376.6
NC_015711:8852850:8861468886146888629851518Myxococcus fulvus HW-1 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-1376.3
NC_015696:285456:2951282951282962971170Francisella sp. TX077308 chromosome, complete genometype I restriction-modification system, specificity subunit S1e-1275.1
NC_015259:734795:7492687492687504401173Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative Restriction modification system, type I hsdS4e-1273.2
NC_014408:1340016:1352967135296713542741308Methanothermobacter marburgensis str. Marburg chromosome, completetype I restriction-modification enzyme, subunit S2e-1171.2
NC_008313:1:94609460107281269Ralstonia eutropha H16 chromosome 1, complete sequenceType I restriction-modification system specificity subunit6e-1169.7
NC_014643:2056280:2064525206452520656281104Rothia dentocariosa ATCC 17931 chromosome, complete genometype I restriction modification enzyme protein S7e-1169.3
NC_012917:3241196:3252422325242232535941173Pectobacterium carotovorum subsp. carotovorum PC1, complete genomerestriction modification system DNA specificity domain protein8e-1168.9
NC_009338:817854:8285608285608296661107Mycobacterium gilvum PYR-GCK chromosome, complete genomerestriction modification system DNA specificity subunit2e-1067.8
NC_017506:1660072:1665738166573816670211284Marinobacter adhaerens HP15 chromosome, complete genometype I site-specific restriction-modification system, S subunit2e-1067.8
NC_016816:1137904:1156994115699411586911698Pantoea ananatis LMG 5342, complete genometype I restriction modification DNA specificity domain protein2e-1067.8
NC_017986:1885613:1908432190843219101171686Pseudomonas putida ND6 chromosome, complete genomerestriction modification system DNA specificity subunit2e-1067.4
NC_011745:2209288:2218310221831022198751566Escherichia coli ED1a chromosome, complete genomeputative type I restriction modification system protein3e-1067
NC_015216:1102837:1118283111828311194941212Methanobacterium sp. AL-21 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-1066.6
NC_004347:4441110:4439626443962644411131488Shewanella oneidensis MR-1, complete genometype I restriction-modification system, S subunit5e-1066.2
NC_008346:2579756:2600348260034826015891242Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRestriction endonuclease S subunits-like protein5e-1066.2
NC_009523:907775:9102129102129113901179Roseiflexus sp. RS-1 chromosome, complete genomerestriction modification system DNA specificity subunit5e-1066.2
NC_012793:1718000:1721130172113017224161287Geobacillus sp. WCH70, complete genomerestriction modification system DNA specificity domain protein9e-1065.5
NC_013169:2351475:2360619236061923618751257Kytococcus sedentarius DSM 20547, complete genomehypothetical protein1e-0965.5
NC_015578:3495034:350381135038113504440630Treponema primitia ZAS-2 chromosome, complete genometype I site-specific deoxyribonuclease1e-0965.5
NC_016943:4799915:481102148110214811941921Blastococcus saxobsidens DD2, complete genomeRestriction endonuclease S subunit1e-0965.5
NC_015850:1155376:1165221116522111689823762Acidithiobacillus caldus SM-1 chromosome, complete genomerestriction-modification protein1e-0964.7
NC_013730:3729626:3747015374701537485771563Spirosoma linguale DSM 74, complete genomerestriction modification system DNA specificity domain protein2e-0964.7
NC_018604:2579000:2603755260375526049511197Brachyspira pilosicoli WesB complete genometype I restriction-modification enzyme S subunit2e-0964.7
NC_011726:3051408:307105630710563071772717Cyanothece sp. PCC 8801, complete genomerestriction modification system DNA specificity domain protein3e-0963.9
NC_015578:465814:4757814757814771931413Treponema primitia ZAS-2 chromosome, complete genomedna methylase-type I restriction-modification system3e-0963.9
NC_014217:2760898:2785685278568527872051521Starkeya novella DSM 506 chromosome, complete genomeRestriction endonuclease S subunits-like protein5e-0963.2
NC_004342:3164500:3178062317806231792971236Leptospira interrogans serovar Lai str. 56601 chromosome I,Type I restriction enzyme EcoprrI specificity protein5e-0963.2
NC_015500:2866027:2878192287819228801321941Treponema brennaborense DSM 12168 chromosome, complete genomeprotein of unknown function DUF459e-0962.4
NC_007484:3035068:3044928304492830463911464Nitrosococcus oceani ATCC 19707, complete genomeRestriction endonuclease S subunits-like9e-0962.4
NC_010939:321492:3299713299713311371167Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeputative Type I restriction enzyme EcoR124II specificity protein9e-0962.4
NC_016612:2009927:2032911203291120339721062Klebsiella oxytoca KCTC 1686 chromosome, complete genometype I restriction enzyme StySPI specificity protein1e-0862
CP002516:4236680:4251283425128342524491167Escherichia coli KO11, complete genomerestriction modification system DNA specificity domain protein2e-0861.6
NC_016902:4236680:4251283425128342524491167Escherichia coli KO11FL chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0861.6
CP002185:4750571:4760420476042047614871068Escherichia coli W, complete genomehypothetical protein1e-0861.6
NC_015677:1282865:1291978129197812937441767Ramlibacter tataouinensis TTB310 chromosome, complete genometype I restriction- modification, DNA specificity subunit2e-0860.8
NC_016051:1005188:1012531101253110138171287Thermococcus sp. AM4 chromosome, complete genomeType I restriction-modification system specificity subunit S3e-0860.8
NC_010003:1126800:1142463114246311437521290Petrotoga mobilis SJ95, complete genomerestriction modification system DNA specificity domain5e-0860.1
NS_000195:526983:5454715454715479842514Candidatus Cloacamonas acidaminovoransRestriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit5e-0860.1
NC_015660:3174424:3182135318213531835531419Geobacillus thermoglucosidasius C56-YS93 chromosome, completerestriction modification system DNA specificity domain-containing protein5e-0859.7
NC_015953:2349503:2376073237607323773111239Streptomyces sp. SirexAA-E chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-0859.3
NC_005966:3334864:3350154335015433515001347Acinetobacter sp. ADP1, complete genomeputative type I restriction-modification system specificity determinant for hsdM and hsdR (HsdS)1e-0758.5
NC_011979:3112911:3123744312374431256781935Geobacter sp. FRC-32, complete genomeRestriction endonuclease S subunit-like protein1e-0758.2
NC_007777:4796627:4796627479662747979371311Frankia sp. CcI3, complete genomerestriction modification system DNA specificity domain2e-0757.8
NC_016745:1548426:1556423155642315582191797Oceanimonas sp. GK1 chromosome, complete genometype I restriction-modification system specificity2e-0757.4
NC_014315:1396990:1412173141217314136661494Nitrosococcus watsoni C-113 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-0756.2
NC_010170:4196197:4209964420996442123572394Bordetella petrii, complete genometype I restriction-modification system, S subunit1e-0655.5
NC_014970:530748:535491535491536114624Mycoplasma haemofelis str. Langford 1, complete genometype I restriction-modification system, S subunit2e-0654.7
NC_013169:1410384:1418952141895214200161065Kytococcus sedentarius DSM 20547, complete genomehypothetical protein2e-0654.3
NC_017161:1:1655416554178341281Hydrogenobacter thermophilus TK-6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0654.3
NC_013799:1:1649316493177731281Hydrogenobacter thermophilus TK-6, complete genomerestriction endonuclease S subunit2e-0654.3
NC_010995:764567:7715967715967739832388Cellvibrio japonicus Ueda107, complete genometype I restriction-modification system, S subunit3e-0653.9
NC_009033:755226:7610247610247624151392Staphylothermus marinus F1, complete genomerestriction modification system DNA specificity domain5e-0653.1