Pre_GI: BLASTP Hits

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Query: NC_013716:3512950:3517004 Citrobacter rodentium ICC168, complete genome

Start: 3517004, End: 3517085, Length: 82

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009832:622969:62717162717162725585Serratia proteamaculans 568, complete genometRNA-Leu7e-0752.8
NC_013850:4829455:48483194848319484840385Klebsiella variicola At-22 chromosome, complete genometRNA-Leu7e-0752.8
NC_013421:478586:48278448278448286885Pectobacterium wasabiae WPP163, complete genometRNA-Leu7e-0752.8
NC_008258:4345400:43647304364730436481485Shigella flexneri 5 str. 8401, complete genometRNA-Leu7e-0752.8
NC_007613:4217557:42288274228827422891185Shigella boydii Sb227, complete genometRNA-Leu7e-0752.8
CU928160:4570498:45756464575646457573085Escherichia coli IAI1 chromosome, complete genometRNA-Leu7e-0752.8
NC_009648:5119271:51258675125867512595185Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Leu7e-0752.8
NC_015663:2090442:20942592094259209434385Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Leu7e-0752.8
NC_014500:443874:45165445165445173885Dickeya dadantii 3937 chromosome, complete genometRNA-Leu7e-0752.8
NC_012912:4194821:42049094204909420499385Dickeya zeae Ech1591, complete genometRNA-Leu7e-0752.8
NC_015566:547387:55159555159555167985Serratia sp. AS12 chromosome, complete genometRNA-Leu7e-0752.8
NC_006905:4638707:46449874644987464507185Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Leu7e-0752.8
NC_013592:446092:45029745029745038185Dickeya dadantii Ech586, complete genometRNA-Leu7e-0752.8
NC_020064:521500:52715452715452723885Serratia marcescens FGI94, complete genometRNA-Leu7e-0752.8
NC_020063:4127161:41414504141450414153485Enterobacteriaceae bacterium strain FGI 57, complete genometRNA-Leu7e-0752.8
NC_004337:4374500:43961484396148439623285Shigella flexneri 2a str. 301, complete genometRNA-Leu7e-0752.8
NC_014121:677799:68198668198668207085Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetRNA-Leu7e-0752.8
CP002185:4750571:47543894754389475447385Escherichia coli W, complete genometRNA-Leu7e-0752.8
NC_016514:506611:51379351379351387785Enterobacter cloacae EcWSU1 chromosome, complete genometRNA-Leu7e-0752.8
NC_012967:4473368:44796334479633447971785Escherichia coli B str. REL606 chromosome, complete genometRNA-Leu7e-0752.8
NC_012947:3917619:39343913934391393447585Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetRNA-Leu7e-0752.8
NC_012731:560199:56595856595856604285Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometRNA-Leu7e-0752.8
NC_012125:4716000:47223014722301472238585Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Leu7e-0752.8
NC_011741:4570498:45756464575646457573085Escherichia coli IAI1 chromosome, complete genometRNA-Leu7e-0752.8
NC_011415:4767892:47698854769885476996985Escherichia coli SE11 chromosome, complete genometRNA-Leu7e-0752.8
NC_009436:522649:52348952348952357385Enterobacter sp. 638, complete genometRNA-Leu7e-0752.8
NC_015968:511282:51906051906051914485Enterobacter asburiae LF7a chromosome, complete genometRNA-Leu7e-0752.8
NC_012880:4117376:41263034126303412638785Dickeya dadantii Ech703, complete genometRNA-Leu7e-0752.8
NC_020211:554736:56418056418056426485Serratia marcescens WW4, complete genometRNA-Leu7e-0752.8
NC_015567:547500:55178155178155186585Serratia sp. AS9 chromosome, complete genometRNA-Leu7e-0752.8
NC_011750:4947500:49505494950549495063385Escherichia coli IAI39 chromosome, complete genometRNA-Leu7e-0752.8
NC_003198:4676536:46836054683605468368985Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Leu7e-0752.8
NC_004631:4661000:46664944666494466657885Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Leu7e-0752.8
NC_004741:4364235:43883444388344438842885Shigella flexneri 2a str. 2457T, complete genometRNA-Leu7e-0752.8
NC_010102:4745949:47477494747749474783082Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Leu8e-0752.4
NC_010067:3056774:30760263076026307610782Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Leu8e-0752.4
NC_011294:4560902:45661204566120456620182Salmonella enterica subsp. enterica serovar Enteritidis strtRNA-Leu8e-0752.4
NC_016831:4517850:45232684523268452334982Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Leu8e-0752.4
NC_017328:4417000:44398624439862443994382Shigella flexneri 2002017 chromosome, complete genometRNA-Leu8e-0752.4
NC_011274:4538722:45439404543940454402182Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Leu2e-0650.8
NC_016832:4649432:46545744654574465465784Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Leu4e-0650.4
NC_016612:2009927:20157502015750201583485Klebsiella oxytoca KCTC 1686 chromosome, complete genometRNA-Leu5e-0649.7
NC_013282:551219:55875955875955884082Cronobacter turicensis, complete genometRNA-Leu6e-0649.7