Pre_GI: BLASTP Hits

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Query: NC_013716:3512950:3512950 Citrobacter rodentium ICC168, complete genome

Start: 3512950, End: 3514032, Length: 1083

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4649432:4650511465051146515931083Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Lipopolysaccharide export system permease protein lptG0645
NC_004631:4661000:4662431466243146635131083Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative inner membrane protein0645
NC_003198:4676536:4679542467954246806241083Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative inner membrane protein0645
CP002797:4603787:4603787460378746048691083Escherichia coli NA114, complete genomeHypothetical protein0642
NC_010473:4564590:4587149458714945882311083Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein0642
CU928160:4570498:4571598457159845726801083Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein0642
NC_000913:4462782:4485341448534144864231083Escherichia coli K12, complete genomeconserved inner membrane protein0642
NC_010498:4821519:4842267484226748433491083Escherichia coli SMS-3-5, complete genomeputative permease0642
AC_000091:4472000:4491998449199844930801083Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein0642
NC_011741:4570498:4571598457159845726801083Escherichia coli IAI1 chromosome, complete genomehypothetical protein0642
NC_011742:4795733:4816731481673148178131083Escherichia coli S88 chromosome, complete genomehypothetical protein0642
NC_012967:4449576:4470545447054544716271083Escherichia coli B str. REL606 chromosome, complete genomeinner membrane protein0642
NC_007613:4217557:4231919423191942330041086Shigella boydii Sb227, complete genomehypothetical protein0639
NC_008258:4345400:4367779436777943688611083Shigella flexneri 5 str. 8401, complete genomehypothetical protein0637
NC_020063:4127161:4146218414621841473001083Enterobacteriaceae bacterium strain FGI 57, complete genomeputative permease6e-179626
NC_020211:554736:5611945611945622641071Serratia marcescens WW4, complete genomelipopolysaccharide export ABC permease of the LptBFGC export complex1e-154546
NC_017047:4298207:4309943430994343110131071Rahnella aquatilis HX2 chromosome, complete genomelipopolysaccharide ABC transporter permease2e-153542
NC_015061:4203767:4216002421600242170721071Rahnella sp. Y9602 chromosome, complete genomepermease YjgP/YjgQ family protein2e-153542
NC_009832:622969:6258556258556269251071Serratia proteamaculans 568, complete genomepermease YjgP/YjgQ family protein3e-152538
NC_015566:547387:5502745502745513441071Serratia sp. AS12 chromosome, complete genomepermease YjgP/YjgQ family protein3e-152538
NC_015567:547500:5504605504605515301071Serratia sp. AS9 chromosome, complete genomepermease YjgP/YjgQ family protein3e-152538
NC_013971:3296272:3330072333007233311481077Erwinia amylovora ATCC 49946 chromosome, complete genomepermease2e-148525
NC_008800:575141:5780265780265790961071Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein2e-147522
NC_004547:442927:4646464646464657221077Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative permease4e-147520
NC_009381:3680638:3702753370275337038291077Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-145515
NC_013421:478586:4814914814914825671077Pectobacterium wasabiae WPP163, complete genomepermease YjgP/YjgQ family protein2e-144512
NC_013592:446092:4490034490034500731071Dickeya dadantii Ech586, complete genomepermease YjgP/YjgQ family protein2e-144511
NC_012880:4117376:4126575412657541276451071Dickeya dadantii Ech703, complete genomepermease YjgP/YjgQ family protein1e-143509
NC_014500:443874:4502204502204512901071Dickeya dadantii 3937 chromosome, complete genomehypothetical protein3e-143508
NC_012912:4194821:4205217420521742062871071Dickeya zeae Ech1591, complete genomepermease YjgP/YjgQ family protein1e-142506
NC_007712:3629358:3648123364812336491931071Sodalis glossinidius str. 'morsitans', complete genomeputative transport protein2e-142505
NC_020418:116500:1551581551581562401083Morganella morganii subsp. morganii KT, complete genomePutative Permease2e-117422
NC_016632:1695500:1706088170608817071611074Serratia symbiotica str. 'Cinara cedri' chromosome, completelipopolysaccharide export system permease protein5e-115414
NC_012913:280506:3036123036123046791068Aggregatibacter aphrophilus NJ8700, complete genomeconserved permease2e-104379
NC_008309:555680:5607555607555618251071Haemophilus somnus 129PT, complete genomeconserved permease2e-98359
NC_017270:2500815:2514774251477425158441071Vibrio cholerae LMA3984-4 chromosome chromosome I, completePermease6e-91334
NC_009053:1257302:1276024127602412771061083Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein5e-90331
NC_010278:1235934:1238052123805212391341083Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,permease5e-90331
NC_018080:1100047:1119067111906711201341068Pseudomonas aeruginosa DK2 chromosome, complete genomepermease3e-56219
NC_002516:4285477:4284417428441742854841068Pseudomonas aeruginosa PAO1, complete genomehypothetical protein3e-56219
NC_011770:1226923:1244494124449412455611068Pseudomonas aeruginosa LESB58, complete genomeputative permease3e-56219
NC_008463:1223012:1240306124030612413731068Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative permease3e-56219
NC_020829:4246847:4260980426098042620471068Pseudomonas denitrificans ATCC 13867, complete genomepermease1e-55216
NC_013861:469500:4735714735714746411071Legionella longbeachae NSW150, complete genomemembrane protein2e-51202
NC_007963:3225306:3248193324819332492571065Chromohalobacter salexigens DSM 3043, complete genomepermease YjgP/YjgQ7e-40164
NC_002977:2254440:2260437226043722615071071Methylococcus capsulatus str. Bath, complete genomehypothetical protein2e-36153
NC_015136:813701:8252318252318263791149Burkholderia sp. CCGE1001 chromosome 1, complete sequencepermease YjgP/YjgQ family protein3e-32139
NC_006350:1084930:1120759112075911219101152Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative permease protein8e-28124
NC_020211:3535622:3541131354113135422101080Serratia marcescens WW4, complete genomeYjgP/YjgQ family permease1e-25117
NC_008825:2063990:2080492208049220816131122Methylibium petroleiphilum PM1, complete genomehypothetical protein6e-21102
NC_014306:4106569:4122488412248841235731086Erwinia billingiae Eb661, complete genomePredicted permease6e-2098.6
NC_011979:1683964:1683964168396416850371074Geobacter sp. FRC-32, complete genomepermease YjgP/YjgQ family protein6e-1375.5
NC_010581:709626:7317207317207328081089Beijerinckia indica subsp. indica ATCC 9039, complete genomepermease YjgP/YjgQ family protein7e-1272
NC_010125:2998619:3022558302255830236911134Gluconacetobacter diazotrophicus PAl 5, complete genomeputative permease1e-0861.2
NC_007514:335085:3350853350853361641080Chlorobium chlorochromatii CaD3, complete genomehypothetical protein4e-0859.3
NC_006677:295253:3149013149013160911191Gluconobacter oxydans 621H, complete genomehypothetical protein6e-0858.9
NC_015144:1333179:1338097133809713391941098Weeksella virosa DSM 16922 chromosome, complete genomepermease YjgP/YjgQ family protein4e-0756.2