Pre_GI: BLASTP Hits

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Query: NC_013716:2898434:2902857 Citrobacter rodentium ICC168, complete genome

Start: 2902857, End: 2903999, Length: 1143

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:531208:543949543949544890942Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yfdC1e-153542
NC_003198:2453074:245977624597762460717942Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-153542
NC_004631:531254:543995543995544936942Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-153542
NC_012125:1360593:137446613744661375407942Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-153541
NC_016831:531404:544195544195545136942Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-153541
NC_011294:2492168:249887024988702499811942Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-153541
NC_011205:2621415:262597226259722626913942Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-153541
NC_011083:2542876:254957725495772550518942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YfdC5e-153540
NC_011274:2483038:248974124897412490682942Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-152539
NC_006511:529424:542166542166543107942Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-152539
NC_011147:529458:542200542200543141942Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-152539
NC_009436:3117661:312438731243873125328942Enterobacter sp. 638, complete genometransport6e-147520
CU928145:2655989:266427426642742665206933Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein1e-146519
CP002185:2608000:261704826170482617980933Escherichia coli W, complete genomepredicted inner membrane protein1e-146519
NC_002655:3260500:326185632618563262788933Escherichia coli O157:H7 EDL933, complete genomeputative transport1e-146519
NC_002695:3189425:319190031919003192832933Escherichia coli O157:H7 str. Sakai, complete genomeputative transport1e-146519
NC_011750:2585015:258749025874902588422933Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-146519
CP002516:1475521:148787714878771488809933Escherichia coli KO11, complete genomeformate/nitrite transporter1e-146519
NC_011748:2655989:266427426642742665206933Escherichia coli 55989, complete genomeconserved hypothetical protein; putative inner membrane protein1e-146519
NC_011415:2732000:274042327404232741355933Escherichia coli SE11 chromosome, complete genomeputative transport protein1e-146519
NC_013361:3254000:326312132631213264053933Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-146519
NC_013941:2928000:293296629329662933898933Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-146519
NC_016902:1475521:148787714878771488809933Escherichia coli KO11FL chromosome, complete genomeformate/nitrite transporter1e-146519
NC_008563:2565876:256897925689792569911933Escherichia coli APEC O1, complete genomeputative transport protein3e-146518
NC_007946:2593500:259628925962892597221933Escherichia coli UTI89, complete genomeputative transport3e-146518
NC_011742:2489000:249211124921112493043933Escherichia coli S88 chromosome, complete genomehypothetical protein3e-146518
NC_012967:2409500:240974324097432410675933Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein4e-146517
NC_009800:2505872:250692125069212507853933Escherichia coli HS, complete genomehypothetical protein4e-146517
NC_007613:2376974:237918723791872380119933Shigella boydii Sb227, complete genomeputative transport8e-146516
NC_000913:2455037:246332324633232464255933Escherichia coli K12, complete genomepredicted inner membrane protein3e-145515
NC_010473:2548946:255508825550882556020933Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein3e-145515
AC_000091:2462461:247074724707472471679933Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein3e-145515
NC_012759:2342986:234912823491282350060933Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein3e-145515
NC_010658:2529033:253125525312552532187933Shigella boydii CDC 3083-94, complete genomehypothetical protein3e-145514
NC_015968:3277217:328402732840273284956930Enterobacter asburiae LF7a chromosome, complete genomeformate/nitrite transporter7e-140497
NC_015663:5253242:525990952599095260820912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeformate/nitrite transporter7e-121434
NC_014839:253961:295463295463296368906Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceformate/nitrite transporter4e-106385
NC_014306:3524980:352996835299683530885918Erwinia billingiae Eb661, complete genomePutative transport protein6e-105381
NC_015224:3291736:330078233007823301693912Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative inner membrane protein1e-101369
NC_016818:1291665:130562513056251306542918Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeformate/nitrite transporter family protein3e-101369
NC_012917:3198000:320294832029483203868921Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeformate/nitrite transporter4e-101368
NC_015061:1251905:127252312725231273440918Rahnella sp. Y9602 chromosome, complete genomeformate/nitrite transporter8e-97353
NC_020209:4312892:434655043465504347440891Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-71269
NC_010501:1286971:129339112933911294287897Pseudomonas putida W619, complete genometransporter, formate/nitrite family1e-68260
NC_015873:2197412:221363522136352214492858Megasphaera elsdenii DSM 20460, complete genomeformate/nitrate transporter2e-40167
NC_014299:82584:132177132177133133957Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceformate/nitrite transporter2e-1997.1
NC_007005:5500196:552150555215055522320816Pseudomonas syringae pv. syringae B728a, complete genomeFormate/nitrite transporter4e-0756.2
NC_005773:5310339:532528553252855326100816Pseudomonas syringae pv. phaseolicola 1448A, complete genomeFormate transporter4e-0756.2