Pre_GI: BLASTP Hits

Some Help

Query: NC_013716:2255102:2260018 Citrobacter rodentium ICC168, complete genome

Start: 2260018, End: 2261004, Length: 987

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009792:714953:734440734440735423984Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-131467
NC_010067:807129:825425825425826408984Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-129462
NC_011745:2302979:2306833230683323078671035Escherichia coli ED1a chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-129460
NC_015761:2062345:206619920661992067182984Salmonella bongori NCTC 12419, complete genomepolysaccharide chain length regulator1e-128459
NC_011080:2161696:216553421655342166517984Salmonella enterica subsp. enterica serovar Newport str. SL254,chain length determinant protein3e-128457
CP002185:2233732:223592522359252236902978Escherichia coli W, complete genomeO6 antigen polymerase (periplasm)2e-127456
NC_016902:1846492:186895318689531869930978Escherichia coli KO11FL chromosome, complete genomelipopolysaccharide biosynthesis protein2e-127456
NC_011415:2346474:235139523513952352372978Escherichia coli SE11 chromosome, complete genomeO-antigen chain length determinant protein9e-128456
NC_011601:2211917:221586022158602216837978Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-128456
NC_012125:1693774:171410117141011715078978Salmonella enterica subsp. enterica serovar Paratyphi C strainpolysaccharide chain length regulator8e-128456
CP002516:1846492:186895318689531869930978Escherichia coli KO11, complete genomelipopolysaccharide biosynthesis protein2e-127456
NC_011294:2156425:216026121602612161244984Salmonella enterica subsp. enterica serovar Enteritidis strpolysaccharide chain length regulator2e-127455
NC_011094:2172271:217611021761102177093984Salmonella enterica subsp. enterica serovar Schwarzengrund strchain length determinant protein4e-127454
NC_008253:2134110:213567721356772136654978Escherichia coli 536, complete genomechain length determinant protein4e-127454
NC_010658:1090104:1113117111311711141511035Shigella boydii CDC 3083-94, complete genomechain length determinant protein5e-127454
NC_007946:2231872:2235818223581822368311014Escherichia coli UTI89, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains5e-127454
NC_004431:2383901:2385469238546923864821014Escherichia coli CFT073, complete genomeChain length determinant protein5e-127454
NC_011205:2283438:228727622872762288259984Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chain length determinant protein1e-126453
NC_003197:2152994:215683221568322157815984Salmonella typhimurium LT2, complete genomelipopolysaccharide O-antigen chain length regulator1e-126453
CU928145:2324495:232835023283502329330981Escherichia coli 55989 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-126453
NC_002695:2769387:276938727693872770367981Escherichia coli O157:H7 str. Sakai, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-126453
NC_011748:2324495:232835023283502329330981Escherichia coli 55989, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-126453
NC_016810:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium strpolysaccharide chain length regulator1e-126453
NC_016856:2204546:220838422083842209367984Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Slipopolysaccharide O-antigen chain length regulator1e-126453
NC_016857:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lipopolysaccharide O-antigen chain length regulator1e-126453
NC_016860:2148535:215237321523732153356984Salmonella enterica subsp. enterica serovar Typhimurium strchain length determinant protein1e-126453
NC_016863:2152739:215657721565772157560984Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1lipopolysaccharide O-antigen chain length regulator1e-126453
NC_011353:2734222:273422227342222735199978Escherichia coli O157:H7 str. EC4115 chromosome, complete genomechain length determinant protein7e-127453
NC_013008:2733203:273320327332032734180978Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-127453
NC_003198:2109775:211361321136132114596984Salmonella enterica subsp. enterica serovar Typhi str. CT18,polysaccharide chain length regulator1e-126452
NC_004631:862002:889332889332890315984Salmonella enterica subsp. enterica serovar Typhi Ty2, completepolysaccharide chain length regulator1e-126452
NC_016832:861956:889286889286890269984Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Chain length determinant protein1e-126452
NC_002655:2839600:2839600283960028406131014Escherichia coli O157:H7 EDL933, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-126452
NC_011740:2135141:213514121351412136121981Escherichia fergusonii ATCC 35469, complete genomeChain length determinant protein (Polysaccharide antigen chain regulator)1e-126452
NC_011149:2110861:211469921146992115682984Salmonella enterica subsp. enterica serovar Agona str. SL483,chain length determinant protein1e-126452
NC_006905:2175361:2178135217813521791721038Salmonella enterica subsp. enterica serovar Choleraesuis strregulator of length of O-antigen component of lipopolysaccharide chains5e-126451
NC_011751:2395882:239982223998222400802981Escherichia coli UMN026 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-126451
NC_011274:2147427:215126321512632152246984Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91polysaccharide chain length regulator3e-126451
CU928160:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-126451
NC_011741:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-126451
NC_009801:2276131:2279985227998522810191035Escherichia coli E24377A, complete genomechain length determinant protein2e-125449
NC_007606:1999870:2018463201846320194971035Shigella dysenteriae Sd197, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-125449
NC_008258:2100646:2105659210565921066721014Shigella flexneri 5 str. 8401, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-125449
NC_004337:2098736:2103749210374921047621014Shigella flexneri 2a str. 301, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-125449
NC_004741:2081649:2086662208666220876751014Shigella flexneri 2a str. 2457T, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-125449
NC_017328:2153083:2158096215809621591091014Shigella flexneri 2002017 chromosome, complete genomeChain length determinant protein2e-125449
NC_011742:2093503:209743220974322098409978Escherichia coli S88 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-125449
NC_017046:2150072:215391021539102154887978Salmonella enterica subsp. enterica serovar Typhimurium str. 798polysaccharide chain length regulator2e-125448
NC_011083:2200613:220445122044512205428978Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,chain length determinant protein2e-125448
NC_007613:864084:8668718668718679051035Shigella boydii Sb227, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-125447
NC_013361:2848949:285114628511462852123978Escherichia coli O26:H11 str. 11368 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains5e-125447
NC_016831:854973:882311882311883288978Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpolysaccharide chain length regulator5e-125447
NC_011750:1034919:105902410590241060004981Escherichia coli IAI39 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-124446
NC_010498:1035406:105479910547991055779981Escherichia coli SMS-3-5, complete genomechain length determinant protein1e-124446
NC_010102:861860:887990887990888967978Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-124446
NC_008563:2182270:2186123218612321871391017Escherichia coli APEC O1, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-124445
AP010958:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-124444
NC_013353:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-124444
NC_012947:1720732:174570417457041746684981Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelipopolysaccharide biosynthesis protein3e-124444
NC_012967:2025127:202732320273232028306984Escherichia coli B str. REL606 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-124444
NC_010468:1775000:179707217970721798052981Escherichia coli ATCC 8739, complete genomelipopolysaccharide biosynthesis protein3e-124444
NC_006511:854785:887812887812888789978Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpolysaccharide chain length regulator3e-123441
NC_011147:854730:881987881987882964978Salmonella enterica subsp. enterica serovar Paratyphi A strpolysaccharide chain length regulator3e-123441
AC_000091:2096672:209945820994582100438981Escherichia coli W3110 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-123441
NC_000913:2092559:209534520953452096325981Escherichia coli K12, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-123441
NC_010473:2183567:218635321863532187333981Escherichia coli str. K-12 substr. DH10B, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-123441
NC_012759:1983975:198782819878281988808981Escherichia coli BW2952 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-123441
NC_013941:2544569:2549493254949325505301038Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeO-antigen chain length determinant Wzz1e-122439
NC_013364:2672837:267558426755842676567984Escherichia coli O111:H- str. 11128, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-112404
NC_014121:3399685:340348234034823404462981Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completechain length determinant protein3e-111401
NC_016514:3048883:305373930537393054719981Enterobacter cloacae EcWSU1 chromosome, complete genomechain length determinant protein3e-110398
NC_009436:2836847:283684728368472837845999Enterobacter sp. 638, complete genomelipopolysaccharide biosynthesis protein5e-102370
NC_020260:1184174:120322312032231204215993Cronobacter sakazakii Sp291, complete genomechain length determinant protein WzzB4e-101368
NC_009778:1141716:1161724116172411627341011Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-101367
NC_013282:2827757:2832655283265528336651011Cronobacter turicensis, complete genomeChain length determinant protein6e-98357
NC_020063:1659795:168299716829971683974978Enterobacteriaceae bacterium strain FGI 57, complete genomechain length determinant protein5e-97354
NC_016816:1676460:1702320170232017033241005Pantoea ananatis LMG 5342, complete genomepolysaccharide antigen chain regulator3e-57222
NC_012691:2225000:2243045224304522441631119Tolumonas auensis DSM 9187, complete genomelipopolysaccharide biosynthesis protein8e-1478.2
NC_007712:4067500:4088895408889540899471053Sodalis glossinidius str. 'morsitans', complete genomeputative lipopolysaccharide biosynthesis protein9e-1477.8
NC_015424:3112637:3121677312167731227831107Aeromonas veronii B565 chromosome, complete genomeO-antigen chain length determinant2e-1376.6
NC_010278:1625695:1633173163317316342851113Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,Wzz-like protein1e-1274.7
NC_006300:600516:6071416071416083311191Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein2e-1273.9
NC_010939:1633000:1638201163820116393131113Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeWzz-like protein1e-1067.8
NC_012962:3933715:3984319398431939854251107Photorhabdus asymbiotica, complete genomeFerric enterobactin transport protein7e-0961.6
NC_009655:866281:8730508730508740901041Actinobacillus succinogenes 130Z chromosome, complete genomelipopolysaccharide biosynthesis protein3e-0859.7
NC_009708:3411153:3417834341783434189851152Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeferric enterobactin ABC transporter2e-0756.6
NC_006155:1191307:1217321121732112184721152Yersinia pseudotuberculosis IP 32953, complete genomeO-antigen chain length determinant2e-0756.6
NC_010634:1175404:1199864119986412010151152Yersinia pseudotuberculosis PB1/+, complete genomelipopolysaccharide biosynthesis protein2e-0756.6
NC_010159:1288000:1312163131216313133141152Yersinia pestis Angola, complete genomechain length determinant family protein Wzz6e-0755.5
NC_005810:872672:8986378986378997881152Yersinia pestis biovar Microtus str. 91001, complete genomeferric enterobactin transport protein FepE6e-0755.5
NC_003143:3446740:3453810345381034549611152Yersinia pestis CO92, complete genomeO-antigen chain length determinant6e-0755.5
NC_008150:2878450:2885475288547528866261152Yersinia pestis Antiqua, complete genomeO-antigen chain length determinant6e-0755.5
NC_009381:3094939:3101963310196331031141152Yersinia pestis Pestoides F chromosome, complete genomeferric enterobactin transport protein FepE6e-0755.5
NC_017168:2281040:2307105230710523082561152Yersinia pestis A1122 chromosome, complete genomeLPS O-antigen length regulator6e-0755.5
NC_010465:3465351:3472743347274334738941152Yersinia pseudotuberculosis YPIII, complete genomelipopolysaccharide biosynthesis protein5e-0755.5
NC_008149:1122693:115015211501521151129978Yersinia pestis Nepal516, complete genomeO-antigen chain length determinant8e-0755.1
NC_017265:3240379:3247403324740332485541152Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,O-antigen chain length determinant1e-0654.7
NC_004088:1196875:1220804122080412219551152Yersinia pestis KIM, complete genomeO-antigen chain length determinant1e-0654.7
NC_017160:3426486:343316534331653434016852Yersinia pestis D182038 chromosome, complete genomeO-antigen chain length determinant1e-0653.9
NC_017154:3444497:345117934511793452030852Yersinia pestis D106004 chromosome, complete genomeO-antigen chain length determinant1e-0653.9
NC_014029:3501500:350821435082143509065852Yersinia pestis Z176003 chromosome, complete genomeO-antigen chain length determinant1e-0653.9