Pre_GI: BLASTP Hits

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Query: NC_013716:1618249:1627809 Citrobacter rodentium ICC168, complete genome

Start: 1627809, End: 1628066, Length: 258

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014839:12519:1251912519139161398Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceIntegrase catalytic region7e-1475.9
NC_012912:2998511:3006412300641230078181407Dickeya zeae Ech1591, complete genomeIntegrase catalytic region6e-1372.8
NC_012912:2426520:2443357244335724447631407Dickeya zeae Ech1591, complete genomeIntegrase catalytic region6e-1372.8
NC_007651:2639553:264915626491562649734579Burkholderia thailandensis E264 chromosome I, complete sequenceSea278e-1372.4
NC_008391:699222:705266705266705760495Burkholderia cepacia AMMD chromosome 2, complete sequencehypothetical protein8e-1372.4
NC_009254:745706:7824117824117837991389Burkholderia vietnamiensis G4 chromosome 3, complete sequenceintegrase catalytic subunit1e-1272
NC_010508:1865602:1866923186692318684131491Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceIntegrase catalytic region1e-1272
NC_012720:114489:1225831225831240731491Burkholderia glumae BGR1 plasmid bglu_3p, complete sequenceIntegrase, catalytic region3e-1270.1
NC_008391:699222:7035757035757050651491Burkholderia cepacia AMMD chromosome 2, complete sequenceIntegrase, catalytic region5e-1269.7
NC_014722:1467996:1475860147586014773351476Burkholderia rhizoxinica HKI 454, complete genometransposase8e-1268.9
NC_008781:2108893:2112300211230021136941395Polaromonas naphthalenivorans CJ2, complete genomeIntegrase, catalytic region9e-1268.9
NC_007511:1780500:178570317857031786638936Burkholderia sp. 383 chromosome 2, complete sequenceTransposase and inactivated derivatives1e-1168.9
NC_013365:92973:1218521218521232491398Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeputative transposase4e-1167
NC_009837:127000:131427131427132305879Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein2e-1064.3
NC_011747:115864:117694117694118560867Escherichia coli S88 plasmid pECOS88, complete sequenceputative transposase (fragment)2e-1064.3
NC_002516:2436304:2443161244316124443661206Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-0961.2
NC_016860:1614280:162692516269251627278354Salmonella enterica subsp. enterica serovar Typhimurium strputative transposase2e-0960.8
NC_011750:1565000:1565465156546515666881224Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-0960.8
NC_010468:2265423:2274292227429222756051314Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region3e-0960.5
CP002516:2305659:2317374231737423186871314Escherichia coli KO11, complete genomeIntegrase catalytic region3e-0960.5
CP002185:1770815:1787169178716917884821314Escherichia coli W, complete genomeintegrase catalytic region3e-0960.5
NC_016902:2305659:2317374231737423186871314Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit3e-0960.5
NC_014311:1888686:1904694190469419061691476Ralstonia solanacearum PSI07 chromosome, complete genometransposase2e-0857.8
NC_014839:12519:1408714087154391353Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceIntegrase catalytic region5e-0753.1
NC_011741:1668842:168616716861671686538372Escherichia coli IAI1 chromosome, complete genome9e-0752.4
CU928160:1668842:168616716861671686538372Escherichia coli IAI1 chromosome, complete genomefragment of Conserved hypothetical protein (part 1)9e-0752.4