Pre_GI: BLASTP Hits

Some Help

Query: NC_013716:1618249:1619912 Citrobacter rodentium ICC168, complete genome

Start: 1619912, End: 1620832, Length: 921

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011742:1574036:159377015937701594684915Escherichia coli S88 chromosome, complete genomehypothetical protein8e-153539
NC_008253:1534840:155355715535571554471915Escherichia coli 536, complete genomehypothetical protein YneE (putative membrane protein)1e-151535
CP002797:1591000:160673816067381607511774Escherichia coli NA114, complete genomeHypothetical protein6e-127453
NC_016845:2781438:279960227996022800519918Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-97354
NC_020064:2960332:298341029834102984327918Serratia marcescens FGI94, complete genomehypothetical protein8e-96350
NC_012731:2739964:275919227591922760109918Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-95349
NC_010694:1966676:197975519797551980708954Erwinia tasmaniensis, complete genomeConserved hypothetical protein YneE4e-86318
NC_012856:1:186931869319640948Ralstonia pickettii 12D chromosome 1, complete genomeprotein of unknown function UPF01872e-64246
NC_005085:659378:663761663761664678918Chromobacterium violaceum ATCC 12472, complete genomeprobable transmembrane protein1e-62240
NC_015563:3203012:325568032556803256591912Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein9e-63240
NC_003295:3688000:369110836911083692028921Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSMEMBRANE PROTEIN8e-63240
NC_015422:1116359:112148611214861122427942Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein5e-59228
NC_015422:1116359:113349011334901134431942Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein5e-59228
NC_010681:121647:138700138700139611912Burkholderia phytofirmans PsJN chromosome 1, complete sequenceprotein of unknown function UPF01873e-58225
NC_014924:3065430:308088530808853081799915Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative transmembrane protein7e-58224
NC_015723:961909:971412971412972269858Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein2e-51203
NC_007086:1032107:105490110549011055785885Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein4e-43175
NC_009664:4423829:444881344488134449631819Kineococcus radiotolerans SRS30216, complete genomeprotein of unknown function UPF01875e-39161
NC_011726:213956:215909215909216853945Cyanothece sp. PCC 8801, complete genomeprotein of unknown function UPF01878e-35147
NC_013161:212941:214894214894215838945Cyanothece sp. PCC 8802, complete genomeprotein of unknown function UPF01878e-35147
NC_007492:3180480:321114232111423212044903Pseudomonas fluorescens PfO-1, complete genomehypothetical protein4e-34145
NC_014623:4683671:471117947111794711949771Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein6e-34144
NC_010501:4787963:480316148031614804084924Pseudomonas putida W619, complete genomeprotein of unknown function UPF01879e-32137
NC_021150:3282702:328465532846553285575921Azotobacter vinelandii CA6, complete genomehypothetical protein1e-31137
NC_012560:3282704:328465732846573285577921Azotobacter vinelandii DJ, complete genomehypothetical protein1e-31137
NC_000911:352263:390905390905391729825Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-28126
NC_017039:352263:391007391007391831825Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein2e-28126
NC_017052:352251:390995390995391819825Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein2e-28126
NC_017277:352263:390905390905391729825Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-28126
NC_014041:4335948:435067443506744351564891Zunongwangia profunda SM-A87 chromosome, complete genomehypothetical protein1e-25117
NC_008314:1559102:1571933157193315729401008Ralstonia eutropha H16 chromosome 2, complete sequenceconserved hypothetical membrane spanning protein8e-23107
NC_019904:2010999:201345320134532014367915Echinicola vietnamensis DSM 17526 chromosome, complete genomehypothetical protein4e-22105
NC_014118:1559770:157241815724181573416999Burkholderia sp. CCGE1002 chromosome chromosome 2, completemembrane protein-like protein1e-21103
NC_015914:5470926:547593554759355476711777Cyclobacterium marinum DSM 745 chromosome, complete genomehypothetical protein1e-1687.4
NC_008319:262894:265659265659266558900Synechococcus sp. CC9311, complete genomehypothetical protein2e-0757