Pre_GI: BLASTP Hits

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Query: NC_013714:1048783:1058087 Bifidobacterium dentium Bd1, complete genome

Start: 1058087, End: 1062271, Length: 4185

Host Lineage: Bifidobacterium dentium; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Common oral and gut bacterium. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium dentium species represents over forty strains which were isolated from human dental caries and human feces.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014830:3387479:3426762342676234300523291Intrasporangium calvum DSM 43043 chromosome, complete genomeTrwC relaxase4e-83310
NC_013235:2129982:2155767215576721594623696Nakamurella multipartita DSM 44233, complete genomeTrwC relaxase8e-83309
NC_015514:3508022:3522251352225135251422892Cellulomonas fimi ATCC 484 chromosome, complete genomeconjugative relaxase domain-containing protein9e-81302
NC_012803:3691:3912039120426443525Micrococcus luteus NCTC 2665, complete genomeconjugative relaxase domain protein, TrwC/TraI family9e-80299
NC_013169:612456:6365886365886401423555Kytococcus sedentarius DSM 20547, complete genomeTrwC relaxase1e-77292
NC_015671:557720:5632625632625661532892Cellvibrio gilvus ATCC 13127 chromosome, complete genomeTrwC relaxase9e-72273
NC_013757:780835:7808357808357863455511Geodermatophilus obscurus DSM 43160, complete genomeTrwC relaxase6e-69263
NC_019673:1988853:2027358202735820317464389Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-68262
NC_008697:118859:1188591188591247625904Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceDNA primase catalytic core, N-terminal domain6e-68260
NC_017955:1667500:1668039166803916735375499Modestobacter marinus, complete genomeDNA primase1e-67259
NC_017955:3670670:3715007371500737204815475Modestobacter marinus, complete genomeDNA primase4e-64247
NC_008699:1673181:1673181167318116785745394Nocardioides sp. JS614, complete genomeDNA primase catalytic core, N-terminal domain8e-62239
NC_013131:10370765:1038668610386686103908464161Catenulispora acidiphila DSM 44928, complete genomeTrwC relaxase4e-61238
NC_017955:3057592:3092495309249530980295535Modestobacter marinus, complete genomeDNA primase1e-60236
NC_008146:1535827:1553403155340315579744572Mycobacterium sp. MCS, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein3e-60234
NC_008705:1557711:1557711155771115622824572Mycobacterium sp. KMS, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein3e-60234
NC_008726:3968222:3968222396822239740805859Mycobacterium vanbaalenii PYR-1, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like4e-59231
NC_009338:2925286:2944475294447529503425868Mycobacterium gilvum PYR-GCK chromosome, complete genomeexonuclease V subunit alpha6e-58227
NC_016943:1422926:1442885144288514483835499Blastococcus saxobsidens DD2, complete genomeDNA primase2e-57225
NC_016943:1442885:1442885144288514483835499Blastococcus saxobsidens DD2, complete genomeDNA primase2e-57225
NC_014158:233733:2645282645282674012874Tsukamurella paurometabola DSM 20162 chromosome, complete genomeTrwC relaxase3e-56221
NC_014215:1243125:1244941124494112479553015Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,4e-56221
NC_016887:3160000:3164447316444731704255979Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein1e-55219
NC_018681:5551000:5551247555124755572405994Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein8e-50200
NC_014550:3316115:3319383331938333220312649Arthrobacter arilaitensis Re117, complete genome2e-47191
NC_006085:925604:9256049256049272951692Propionibacterium acnes KPA171202, complete genometransfer protein homolog TraA2e-25119
NC_013729:2258582:2280446228044622851314686Kribbella flavida DSM 17836, complete genomeTrwC relaxase4e-25118
NC_008278:6885254:6885254688525468896694416Frankia alni ACN14a, complete genomehypothetical protein; Putative conjugal transfer protein traA2e-23112
NC_011991:65368:6536865368694384071Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceTi-type conjugative transfer relaxase TraA3e-1998.6
NC_020453:3950838:3987555398755539886791125Agromonas oligotrophica S58 DNA, complete genomeputative ATP-dependent exoDNAse (exonuclease V) subunit alpha3e-1998.6
NC_009445:838281:8382818382818412923012Bradyrhizobium sp. ORS 278 chromosome, complete genomeconjugal transfer relaxase TraA4e-1895.1
NC_008435:1131242:1160526116052611635463021Rhodopseudomonas palustris BisA53, complete genomeMobA/MobL protein8e-1894
NC_009720:251703:2737272737272766572931Xanthobacter autotrophicus Py2, complete genomeconjugal transfer relaxase TraA3e-1791.7
NC_009720:2945655:2945655294565529485852931Xanthobacter autotrophicus Py2, complete genomeconjugal transfer relaxase TraA3e-1791.7
NC_009720:464078:4822914822914852482958Xanthobacter autotrophicus Py2, complete genomeconjugal transfer relaxase TraA7e-1790.9
NC_009445:1316000:1316372131637213193262955Bradyrhizobium sp. ORS 278 chromosome, complete genomeconjugal transfer relaxase TraA7e-1790.9
NC_008699:1132790:1161255116125511638732619Nocardioides sp. JS614, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like8e-1790.5
NC_010338:1216385:1217970121797012208282859Caulobacter sp. K31, complete genomeTi-type conjugative transfer relaxase TraA1e-1689.7
NC_007925:1085500:1087177108717710902813105Rhodopseudomonas palustris BisB18, complete genomeMobA/MobL protein1e-1690.1
NC_010338:359940:3722873722873751452859Caulobacter sp. K31, complete genomeTi-type conjugative transfer relaxase TraA4e-1688.2
NC_014217:2760898:2762803276280327657602958Starkeya novella DSM 506 chromosome, complete genomeTi-type conjugative transfer relaxase TraA4e-1688.2
NC_007958:4371125:4393639439363943967583120Rhodopseudomonas palustris BisB5, complete genomeMobA/MobL protein6e-1687.4
NC_014217:2020737:2020737202073720236942958Starkeya novella DSM 506 chromosome, complete genomeTi-type conjugative transfer relaxase TraA8e-1687
NC_007925:138927:1633911633911664953105Rhodopseudomonas palustris BisB18, complete genomeMobA/MobL protein9e-1687
NC_008699:1816392:1829796182979618323962601Nocardioides sp. JS614, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like3e-1585.1
NC_014816:1592799:1592799159279915960233225Asticcacaulis excentricus CB 48 chromosome 1, complete sequenceti-type conjugative transfer relaxase traa2e-1482.8
NC_015675:5607297:5632354563235456354013048Mesorhizobium opportunistum WSM2075 chromosome, complete genomeTi-type conjugative transfer relaxase TraA1e-1379.7
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI1e-1380.1
NC_014006:3124818:3167502316750231703452844Sphingobium japonicum UT26S chromosome 1, complete genomeconjugal transfer protein TraA2e-1379.3
NC_013757:1499643:1501336150133615050073672Geodermatophilus obscurus DSM 43160, complete genomeTrwC relaxase4e-1378.6
NC_002678:763808:7856497856497886963048Mesorhizobium loti MAFF303099, complete genomeprobable conjugal transfer protein traA6e-1377.8
NC_009921:1611132:1633885163388516385344650Frankia sp. EAN1pec, complete genomeTrwC relaxase7e-1377.4
NC_016943:21364:2136421364249903627Blastococcus saxobsidens DD2, complete genomeconjugative relaxase TrwC1e-1277
NC_013757:21245:2124521245240252781Geodermatophilus obscurus DSM 43160, complete genomeTrwC relaxase1e-1276.6
NC_011916:467106:4887684887684915782811Caulobacter crescentus NA1000 chromosome, complete genomeDNA relaxase/conjugal transfer nickase-helicase TrwC1e-1276.6
NC_014819:25765:4311743117462603144Asticcacaulis excentricus CB 48 plasmid pASTEX02, completeconjugative relaxase domain protein3e-1275.1
NC_010606:25090:2872928729308792151Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceTrwC protein4e-1274.7
NC_014550:3316115:3316115331611533186702556Arthrobacter arilaitensis Re117, complete genome2e-1172.4
NC_008322:1186000:1188914118891411920213108Shewanella sp. MR-7, complete genomeTrwC protein5e-1171.2
NC_015377:34445:5672856728596222895Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceTrwC protein1e-1070.1
NC_007385:157516:1693421693421736254284Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment1e-1070.1
NC_007794:2304768:2324303232430323259311629Novosphingobium aromaticivorans DSM 12444, complete genomeTrwC protein1e-1069.7
NC_009378:106193:1061931061931114335241Yersinia pestis Pestoides F plasmid MT, complete sequenceconjugal transfer nickase/helicase TraI3e-1068.9
NC_009484:2660048:2674385267438526771562772Acidiphilium cryptum JF-5 chromosome, complete genomeexonuclease V subunit alpha3e-0965.5
NC_011365:1969198:198678719867871987755969Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeTrwC relaxase3e-0965.5
NC_014666:8459724:8473764847376484785034740Frankia sp. EuI1c chromosome, complete genomeTrwC relaxase7e-0964.3
NC_015850:1006980:1016198101619810193653168Acidithiobacillus caldus SM-1 chromosome, complete genomeputative TraI protein1e-0863.2
NC_016943:1956719:1971062197106219746853624Blastococcus saxobsidens DD2, complete genomeconjugative relaxase TrwC7e-0860.8
NC_018531:1991218:200121320012132001785573Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein3e-0758.5
NC_007575:1694877:1701208170120817045463339Sulfurimonas denitrificans DSM 1251, complete genomeexonuclease V subunit alpha4e-0758.2
NC_007722:168937:1893461893461922582913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein2e-0656.2
NC_013422:991500:1012572101257210154032832Halothiobacillus neapolitanus c2, complete genomeconjugative relaxase domain protein3e-0655.5
NC_016626:1751159:1751159175115917542153057Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative traC, type IV secretion system5e-0654.7
NC_009445:6424000:6443614644361464466253012Bradyrhizobium sp. ORS 278 chromosome, complete genomeconjugal transfer relaxase TraA9e-0653.9