Pre_GI: BLASTN Hits

Some Help

Query: NC_013410:89811 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 89811, End: 113798, Length: 23988

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008781:21088932108893212953620644Polaromonas naphthalenivorans CJ2, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_015152:1341353*1341353136519323841Spirochaeta sp. Buddy chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015566:29579562957956297755619601Serratia sp. AS12 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013715:1207774*1207774124878041007Rothia mucilaginosa DY-18, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_016048:184500*18450023109946600Oscillibacter valericigenes Sjm18-20, complete genome7e-0763.9BLASTN svgBLASTP svg