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Query: NC_013410:3787626 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3787626, End: 3807158, Length: 19533

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CU928160:2715246*2715246274020524960Escherichia coli IAI1 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_007005:14159621415962143723321272Pseudomonas syringae pv. syringae B728a, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_010939:19207811920781194452123741Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete2e-1281.8BLASTN svgBLASTP svg
NC_009053:18954851895485191855623072Actinobacillus pleuropneumoniae L20, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015572:3091707*3091707313267640970Methylomonas methanica MC09 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009092:15043631504363158010375741Shewanella loihica PV-4, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_010424:17784591778459180631227854Candidatus Desulforudis audaxviator MP104C, complete genome2e-0661.9BLASTN svgBLASTP svg