Pre_GI: BLASTN Hits

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Query: NC_013410:2586500 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2586500, End: 2610182, Length: 23683

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013592:1668092*1668092170683538744Dickeya dadantii Ech586, complete genome3e-21111BLASTN svgBLASTP svg
NC_009512:4287605*4287605432250934905Pseudomonas putida F1, complete genome1e-20109BLASTN svgBLASTP svg
NC_008463:2654014*2654014267605522042Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-20109BLASTN svgBLASTP svg
NC_008344:1*13873538735Nitrosomonas eutropha C91, complete genome1e-20109BLASTN svgBLASTP svg
NC_008150:1384102*1384102140260518504Yersinia pestis Antiqua, complete genome1e-20109BLASTN svgBLASTP svg
NC_008149:2517538*2517538254015722620Yersinia pestis Nepal516, complete genome1e-20109BLASTN svgBLASTP svg
NC_006155:2084669*2084669210379619128Yersinia pseudotuberculosis IP 32953, complete genome1e-20109BLASTN svgBLASTP svg
NC_005810:1663672*1663672168742323752Yersinia pestis biovar Microtus str. 91001, complete genome1e-20109BLASTN svgBLASTP svg
NC_004547:3207776*3207776324611038335Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-20109BLASTN svgBLASTP svg
NC_004129:4093610*4093610411954425935Pseudomonas fluorescens Pf-5, complete genome1e-20109BLASTN svgBLASTP svg
NC_004088:2691565*2691565271495023386Yersinia pestis KIM, complete genome1e-20109BLASTN svgBLASTP svg
NC_003143:2101902*2101902212009918198Yersinia pestis CO92, complete genome1e-20109BLASTN svgBLASTP svg
NC_010159:2128157*2128157214655218396Yersinia pestis Angola, complete genome1e-20109BLASTN svgBLASTP svg
NC_010465:2582080*2582080260359921520Yersinia pseudotuberculosis YPIII, complete genome1e-20109BLASTN svgBLASTP svg
NC_012880:1711062*1711062173095119890Dickeya dadantii Ech703, complete genome1e-20109BLASTN svgBLASTP svg
NC_015733:3923800*3923800394679722998Pseudomonas putida S16 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_015733:1680500*1680500170310522606Pseudomonas putida S16 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_015566:1941407*1941407196269221286Serratia sp. AS12 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_015379:5002595*5002595502209219498Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-20109BLASTN svgBLASTP svg
NC_015379:2417312*2417312246459947288Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-20109BLASTN svgBLASTP svg
NC_015224:2061951*2061951208443822488Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-20109BLASTN svgBLASTP svg
NC_014837:1570500*1570500160135230853Pantoea sp. At-9b chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_014500:4257145*4257145428370126557Dickeya dadantii 3937 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_013946:879199*87919990227423076Meiothermus ruber DSM 1279 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_013946:2854219*2854219287538821170Meiothermus ruber DSM 1279 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_007492:3462929*3462929350940646478Pseudomonas fluorescens PfO-1, complete genome5e-20107BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome5e-20107BLASTN svgBLASTP svg
NC_015740:2692023*2692023271734525323Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete5e-20107BLASTN svgBLASTP svg
NC_014974:404015*40401542533521321Thermus scotoductus SA-01 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_013416:875758*87575890109925342Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-18101BLASTN svgBLASTP svg
NC_013416:820989*82098984592424936Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-18101BLASTN svgBLASTP svg
NC_007645:2628423*2628423265192123499Hahella chejuensis KCTC 2396, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013508:2130681*2130681216209931419Edwardsiella tarda EIB202, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014212:319815*31981533968619872Meiothermus silvanus DSM 9946 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014212:3206860*3206860322629919440Meiothermus silvanus DSM 9946 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015387:2042042*2042042206360521564Marinithermus hydrothermalis DSM 14884 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_019940:2893535*2893535291820624672Thioflavicoccus mobilis 8321 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007484:1823751*1823751186794644196Nitrosococcus oceani ATCC 19707, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_007948:4558000*4558000461212254123Polaromonas sp. JS666, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009085:131000*13100015492623927Acinetobacter baumannii ATCC 17978, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010611:154307*15430717821523909Acinetobacter baumannii ACICU, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011027:1488455*1488455150948721033Chlorobaculum parvum NCIB 8327, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014219:2931796*2931796295390522110Bacillus selenitireducens MLS10 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015577:2143477*2143477216481221336Treponema azotonutricium ZAS-9 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008740:1357312*1357312138014322832Marinobacter aquaeolei VT8, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_014219:83888*8388810707623189Bacillus selenitireducens MLS10 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015578:1582827*1582827160713224306Treponema primitia ZAS-2 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003902:2469500*2469500250580636307Xanthomonas campestris pv. campestris str. ATCC 33913, complete5e-1177.8BLASTN svgBLASTP svg
NC_003919:2435058*2435058245860723550Xanthomonas axonopodis pv. citri str. 306, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006512:696000*69600071719521196Idiomarina loihiensis L2TR, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007086:2408837*2408837243103522199Xanthomonas campestris pv. campestris str. 8004, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010688:2400471*2400471242735326883Xanthomonas campestris pv. campestris, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012691:2614603*26146032727599112997Tolumonas auensis DSM 9187, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014153:2282725*2282725230725524531Thiomonas intermedia K12 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014721:2012751*2012751203422421474Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_008095:6143738*6143738618324739510Myxococcus xanthus DK 1622, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014376:3671441*3671441369455323113Clostridium saccharolyticum WM1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014376:4369666*4369666439393824273Clostridium saccharolyticum WM1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014376:787460*78746084751960060Clostridium saccharolyticum WM1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015977:935798*93579897190436107Roseburia hominis A2-183 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018691:2214464*2214464224165927196Alcanivorax dieselolei B5 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_020126:7015976*7015976703659620621Myxococcus stipitatus DSM 14675, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007880:290059*29005931361823560Francisella tularensis subsp. holarctica, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008369:291640*29164031483523196Francisella tularensis subsp. holarctica OSU18, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009749:289695*28969530981820124Francisella tularensis subsp. holarctica FTA, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013132:7954000*7954000799998145982Chitinophaga pinensis DSM 2588, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003454:249304*24930426978820485Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete1e-0869.9BLASTN svgBLASTP svg
NC_006570:1526071*1526071154588919819Francisella tularensis subsp. tularensis Schu 4, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008245:1525877*1525877155460728731Francisella tularensis subsp. tularensis FSC 198, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008601:1560482*1560482160300942528Francisella tularensis subsp. novicida U112, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008782:1277117*1277117129923122115Acidovorax sp. JS42, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010677:456277*45627747729321017Francisella tularensis subsp. mediasiatica FSC147, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011992:1179084*1179084120383024747Acidovorax ebreus TPSY, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015422:1643000*1643000166547622477Alicycliphilus denitrificans K601 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015731:1062824*1062824108197319150Nitrosomonas sp. Is79A3 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_020064:1854589*1854589187841223824Serratia marcescens FGI94, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014221:266638*26663829153224895Truepera radiovictrix DSM 17093 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014762:2428721*2428721245871529995Sulfuricurvum kujiense DSM 16994 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015177:1131173*1131173117511143939Pedobacter saltans DSM 12145 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015593:2103815*2103815214825244438Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete2e-0765.9BLASTN svgBLASTP svg
NC_010725:3917369*3917369396168844320Methylobacterium populi BJ001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009668:594500*59450062259928100Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_009667:1341000*1341000136313822139Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_007794:262402*26240229308630685Novosphingobium aromaticivorans DSM 12444, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003228:2973266*2973266299679923534Bacteroides fragilis NCTC 9343, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006322:717953*71795373924121289Bacillus licheniformis ATCC 14580, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006347:2899653*2899653292225722605Bacteroides fragilis YCH46, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006270:718169*71816974061322445Bacillus licheniformis ATCC 14580, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004668:3156247*3156247318179425548Enterococcus faecalis V583, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007760:40558604055860409898143122Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009802:1917917*1917917194043822522Campylobacter concisus 13826, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010524:2761394*2761394278436822975Leptothrix cholodnii SP-6, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011891:41040004104000412750023501Anaeromyxobacter dehalogenans 2CP-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013730:7458076*7458076747729019215Spirosoma linguale DSM 74, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014935:31020*310205039419375Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_021182:4557608*4557608459730239695Clostridium pasteurianum BC1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004668:241352*24135226701725666Enterococcus faecalis V583, complete genome3e-0661.9BLASTN svgBLASTP svg