Query: NC_013410:155236 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,
Start: 155236, End: 178224, Length: 22989
Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria
General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_012778:1946924 | 1946924 | 1970786 | 23863 | Eubacterium eligens ATCC 27750, complete genome | 4e-30 | 141 | BLASTN svg | BLASTP svg |
NC_016002:2946702* | 2946702 | 2993761 | 47060 | Pseudogulbenkiania sp. NH8B, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_018721:297906 | 297906 | 320287 | 22382 | Psychroflexus torquis ATCC 700755 chromosome, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014562:2563466* | 2563466 | 2612484 | 49019 | Pantoea vagans C9-1 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
AC_000091:2872000 | 2872000 | 2896526 | 24527 | Escherichia coli W3110 DNA, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_000913:2873443 | 2873443 | 2892201 | 18759 | Escherichia coli K12, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010473:2963951 | 2963951 | 2988434 | 24484 | Escherichia coli str. K-12 substr. DH10B, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_020126:6738959* | 6738959 | 6758038 | 19080 | Myxococcus stipitatus DSM 14675, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013166:961431 | 961431 | 983779 | 22349 | Kangiella koreensis DSM 16069, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010468:1029471* | 1029471 | 1054991 | 25521 | Escherichia coli ATCC 8739, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014217:3431878* | 3431878 | 3457783 | 25906 | Starkeya novella DSM 506 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013422:1604157 | 1604157 | 1623477 | 19321 | Halothiobacillus neapolitanus c2, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008786:1332041 | 1332041 | 1355778 | 23738 | Verminephrobacter eiseniae EF01-2, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |