Pre_GI: BLASTN Hits

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Query: NC_013410:1203937 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1203937, End: 1228308, Length: 24372

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014727:18777641877764191259934836Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,1e-1489.7BLASTN svgBLASTP svg
NC_014727:18321441832144185459922456Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,1e-1489.7BLASTN svgBLASTP svg
NC_008054:16491601649160168970940550Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete1e-1489.7BLASTN svgBLASTP svg
NC_008054:16175441617544164365226109Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete1e-1489.7BLASTN svgBLASTP svg
NC_006347:21549062154906217809923194Bacteroides fragilis YCH46, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008529:16344031634403165802723625Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete2e-1385.7BLASTN svgBLASTP svg
NC_002163:13542151354215137844524231Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome3e-0661.9BLASTN svgBLASTP svg