Some Help

Query: NC_013410:89811:97398 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 97398, End: 98399, Length: 1002

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5336773:539978153997815400563783Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein7e-34144
NC_015674:1114915:1117668111766811199712304Helicobacter bizzozeronii CIII-1, complete genomehypothetical protein5e-26118
NC_014117:442616:473121473121473906786Burkholderia sp. CCGE1002 chromosome chromosome 1, completeserine/threonine phosphoprotein phosphatase1e-1687.4
NC_011884:1998559:200641320064132007243831Cyanothece sp. PCC 7425, complete genomeserine/threonine phosphoprotein phosphatase2e-1686.7
NC_015376:2010009:202235220223522023119768Burkholderia gladioli BSR3 chromosome chromosome 2, completeserine/threonine phosphoprotein phosphatase3e-1582.8
NC_015161:1556766:157013715701371570961825Deinococcus proteolyticus MRP chromosome, complete genomeserine/threonine phosphoprotein phosphatase3e-1169.3
NC_008312:3638104:365645036564503657214765Trichodesmium erythraeum IMS101, complete genomehypothetical protein8e-1168.2
NC_006625:144929:1648211648211665541734Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein2e-1067
NC_013851:2317091:232631423263142327060747Allochromatium vinosum DSM 180 chromosome, complete genomeprotein serine/threonine phosphatase7e-1065.1
NC_009778:1717458:1724371172437117260081638Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-0963.2
NC_015573:1573621:157993715799371580728792Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeserine/threonine phosphoprotein phosphatase3e-0962.8
NC_011761:2546081:256026025602602561024765Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein1e-0860.8
NC_011206:2447905:246208424620842462848765Acidithiobacillus ferrooxidans ATCC 53993, complete genomehypothetical protein1e-0860.8
NC_020126:2979959:299209829920982992874777Myxococcus stipitatus DSM 14675, complete genomeserine/threonine protein phosphatase2e-0860.5
NC_014752:98117:1226531226531236571005Neisseria lactamica ST-640, complete genomehypothetical protein3e-0859.7
NC_009925:2533547:255183725518372552646810Acaryochloris marina MBIC11017, complete genomehypothetical protein2e-0757