Pre_GI: BLASTP Hits

Some Help

Query: NC_013410:89811:93019 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 93019, End: 94647, Length: 1629

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014220:837926:8447798447798467942016Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase2e-94347
NC_014829:4511738:4518366451836645201921827Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase4e-79295
NC_014328:180482:1804821804821825872106Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-77289
NC_006270:3627974:3649808364980836516761869Bacillus licheniformis ATCC 14580, complete genomeanaerobic ribonucleoside triphosphate reductase5e-74278
NC_006322:3628143:3649977364997736518451869Bacillus licheniformis ATCC 14580, complete genomeanaerobic ribonucleoside triphosphate reductase5e-74278
NC_005945:3359598:3371119337111933729751857Bacillus anthracis str. Sterne, complete genomeanaerobic ribonucleoside triphosphate reductase1e-73278
NC_020291:79502:8634486344884582115Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeanaerobic ribonucleoside-triphosphate reductase NrdD5e-72272
NC_016048:2055199:2055199205519920575352337Oscillibacter valericigenes Sjm18-20, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-70268
NC_009617:68779:8726087260893682109Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeanaerobic ribonucleoside triphosphate reductase3e-70266
NC_021171:608315:6266766266766285231848Bacillus sp. 1NLA3E, complete genomeanaerobic ribonucleoside triphosphate reductase6e-69261
NC_016023:1923170:1926158192615819280291872Bacillus coagulans 36D1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase2e-68260
NC_014828:2657623:2673882267388226762272346Ethanoligenens harbinense YUAN-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase2e-68260
NC_015425:198315:1983151983152004172103Clostridium botulinum BKT015925 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-68258
NC_007907:456164:4561644561644585332370Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-67254
NC_014628:501755:5082215082215100831863Paenibacillus polymyxa SC2 plasmid pSC2, complete sequenceAnaerobic ribonucleoside-triphosphate reductase, putative2e-66253
NC_012673:77610:8689186891887411851Exiguobacterium sp. AT1b, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-66253
NC_014614:1090000:1093648109364810959962349Clostridium sticklandii, complete genomeanaerobic ribonucleoside triphosphate reductase7e-65248
NC_013316:120759:1398251398251421762352Clostridium difficile R20291, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-60234
NC_009089:117980:1380201380201403712352Clostridium difficile 630, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-60233
NC_002950:1334500:1335588133558813379842397Porphyromonas gingivalis W83, complete genomeanaerobic ribonucleoside triphosphate reductase8e-57221
NC_015571:1265121:1267871126787112702672397Porphyromonas gingivalis TDC60, complete genomeanaerobic ribonucleoside triphosphate reductase2e-56220
NC_010729:1549744:1550268155026815526642397Porphyromonas gingivalis ATCC 33277, complete genomeanaerobic ribonucleoside-triphosphate reductase4e-56219
NC_004663:2509433:2511803251180325141962394Bacteroides thetaiotaomicron VPI-5482, complete genomeanaerobic ribonucleoside triphosphate reductase9e-56218
NC_014633:837588:8793108793108816612352Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceribonucleoside-triphosphate reductase class III catalytic subunit3e-53209
NC_017353:361350:3913343913343931811848Staphylococcus lugdunensis N920143, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-50201
NC_016818:546805:5687015687015708842184Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeanaerobic ribonucleoside-triphosphate reductase1e-46187
NC_020063:4170464:4190379419037941925172139Enterobacteriaceae bacterium strain FGI 57, complete genomeribonucleoside-triphosphate reductase class III catalytic subunit1e-46187
NC_020164:280087:2987222987223005661845Staphylococcus warneri SG1, complete genomeanaerobic ribonucleoside triphosphate reductase1e-43178
NC_013895:605488:6206306206306228402211Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeanaerobic ribonucleoside-triphosphate reductase2e-43177
NC_012913:56258:6056860568626942127Aggregatibacter aphrophilus NJ8700, complete genomeanaerobic ribonucleoside-triphosphate reductase8e-43175
NC_015562:899030:9280279280279303152289Methanotorris igneus Kol 5 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase4e-40166
NC_015636:927815:9278159278159301212307Methanothermococcus okinawensis IH1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase4e-40166
NC_009513:1363987:1363987136398713662212235Lactobacillus reuteri F275, complete genomeanaerobic ribonucleoside triphosphate reductase7e-40165
NC_015697:321311:3228583228583250922235Lactobacillus reuteri SD2112 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase large subunit3e-39163
NC_015514:3911655:3917352391735239196102259Cellulomonas fimi ATCC 484 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-38161
NC_017217:1499832:1528020152802015304462427Bifidobacterium animalis subsp. lactis V9 chromosome, completeanaerobic ribonucleoside triphosphate reductase5e-37155
NC_017216:1494190:1522378152237815248042427Bifidobacterium animalis subsp. lactis BLC1, complete genomeanaerobic ribonucleoside triphosphate reductase5e-37155
NC_011835:625472:6536626536626560882427Bifidobacterium animalis subsp. lactis AD011 chromosome, completeanaerobic ribonucleoside triphosphate reductase5e-37155
NC_012815:1494263:1522451152245115248772427Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeanaerobic ribonucleoside triphosphate reductase5e-37155
NC_017215:1499179:1527367152736715298412475Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Ribonucleoside-triphosphate reductase5e-37155
NC_017214:191791:2199792199792224532475Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeAnaerobic ribonucleoside-triphosphate reductase5e-37155
NC_018720:357716:3844563844563868672412Bifidobacterium asteroides PRL2011 chromosome, complete genomeanaerobic ribonucleoside triphosphate reductase4e-36152
NC_016048:987699:9924009924009945772178Oscillibacter valericigenes Sjm18-20, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-33144
NC_015574:114426:1214861214861238222337Methanobacterium sp. SWAN-1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase5e-33142
NC_009635:1067334:1071030107103010747073678Methanococcus aeolicus Nankai-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-31136
NC_013170:277321:2992712992713014932223Cryptobacterium curtum DSM 15641, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-29130
NC_015320:273979:2791762791762812782103Archaeoglobus veneficus SNP6 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-27124
NC_015389:809474:8094748094748117112238Coriobacterium glomerans PW2 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-27122
NC_014389:353000:3536853536853559402256Butyrivibrio proteoclasticus B316 plasmid pCY360, completeanaerobic ribonucleoside triphosphate reductase NrdD31e-24115
NC_015737:1441086:1442779144277914449682190Clostridium sp. SY8519, complete genomeoxygen-sensitive ribonucleoside-triphosphate reductase3e-24113
NC_016801:394400:4114414114414132251785Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeanaerobic ribonucleoside triphosphate reductase2e-22107
NC_015499:1097432:1098124109812411004002277Thermodesulfobium narugense DSM 14796 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-22105
NC_018866:1706000:1723045172304517251682124Dehalobacter sp. DCA chromosome, complete genomeRibonucleotide reductase of class III (anaerobic), large subunit3e-1997.1
NC_014532:722151:7380617380617397941734Halomonas elongata DSM 2581, complete genomeanaerobic ribonucleoside triphosphate reductase5e-1996.3
NC_015942:3185193:3204638320463832066652028Acidithiobacillus ferrivorans SS3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-1995.9
NC_013851:2610847:2612385261238526144362052Allochromatium vinosum DSM 180 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-1893.6
NC_020409:1407857:1427702142770214297652064Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeAnaerobic ribonucleoside-triphosphate reductase6e-1892.8
NC_014484:762710:7668567668567689252070Spirochaeta thermophila DSM 6192 chromosome, complete genomeanaerobic ribonucleoside triphosphate reductase1e-1792
NC_014205:1331594:1347586134758613494811896Staphylothermus hellenicus DSM 12710 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-1789.4
NC_009033:1042500:1042552104255210444531902Staphylothermus marinus F1, complete genomeanaerobic ribonucleoside-triphosphate reductase1e-1688.2
NC_019902:1681320:1681320168132016833922073Thioalkalivibrio nitratireducens DSM 14787, complete genomeRibonucleotide reductase of class III (anaerobic), large subunit2e-1688.2
NC_015681:102000:1227331227331248052073Thermodesulfatator indicus DSM 15286 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase3e-1687.4
NC_014160:869873:8742248742248761011878Thermosphaera aggregans DSM 11486 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase6e-1582.8
NC_014377:1985714:2004231200423120063212091Thermosediminibacter oceani DSM 16646 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase7e-1582.4
NC_011529:1722829:1750066175006617519101845Thermococcus onnurineus NA1, complete genomenrdD anaerobic ribonucleoside triphosphate reductase6e-1272.8
NC_015865:1108089:1108089110808911120603972Thermococcus sp. 4557 chromosome, complete genomeanaerobic ribonucleoside triphosphate reductase5e-1066.6