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Query: NC_013410:89811:103206 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 103206, End: 104498, Length: 1293

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016745:2785346:2799367279936728006321266Oceanimonas sp. GK1 chromosome, complete genomelipopolysaccharide biosynthesis protein9e-27121
NC_009483:3727490:3760208376020837614521245Geobacter uraniireducens Rf4 chromosome, complete genomepolysaccharide biosynthesis protein1e-22107
NC_010682:661272:6733886733886746351248Ralstonia pickettii 12J chromosome 1, complete sequencepolysaccharide biosynthesis protein3e-22106
NC_016901:3530248:3543060354306035443101251Shewanella baltica OS678 chromosome, complete genomeWzxB protein9e-22105
NC_009997:3583166:3594620359462035958701251Shewanella baltica OS195, complete genomepolysaccharide biosynthesis protein9e-22105
NC_009615:4425500:4433082443308244343801299Parabacteroides distasonis ATCC 8503 chromosome, complete genomeflippase, involved in lipopolysaccharide biosynthesis4e-21103
AP010958:2504072:2518514251851425197791266Escherichia coli O103:H2 str. 12009 DNA, complete genomeO-antigen flippase Wzx9e-21101
NC_013353:2504072:2518514251851425197791266Escherichia coli O103:H2 str. 12009, complete genomeO-antigen flippase Wzx9e-21101
NC_007517:1468719:1482351148235114836191269Geobacter metallireducens GS-15, complete genomelipopolysaccharide biosynthesis protein2e-1997.1
NC_009778:1141716:1154750115475011560121263Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1996.7
NC_012917:1506083:1521956152195615232091254Pectobacterium carotovorum subsp. carotovorum PC1, complete genomepolysaccharide biosynthesis protein7e-1685.5
NC_014803:475355:4798364798364810771242Pseudoalteromonas sp. SM9913 chromosome chromosome I, completepolysaccharide biosynthesis protein8e-1685.5
NC_015578:3980496:4006967400696740082771311Treponema primitia ZAS-2 chromosome, complete genomelipopolysaccharide biosynthesis protein2e-1377
NC_007712:4067500:4081359408135940826091251Sodalis glossinidius str. 'morsitans', complete genomeputative lipopolysaccharide biosynthesis protein5e-1065.9
NC_014313:165490:1742271742271755341308Hyphomicrobium denitrificans ATCC 51888 chromosome, completepolysaccharide biosynthesis protein2e-0963.9