Pre_GI: BLASTP Hits

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Query: NC_013410:3358008:3378605 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3378605, End: 3379045, Length: 441

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014219:2491021:249443924944392494843405Bacillus selenitireducens MLS10 chromosome, complete genomeNusB antitermination factor2e-1891.3
NC_010520:2061502:207968120796812080106426Clostridium botulinum A3 str. Loch Maree, complete genomeN utilization substance protein B2e-1684.3
NC_011060:459615:495793495793496308516Pelodictyon phaeoclathratiforme BU-1, complete genomeNusB antitermination factor6e-1682.8
NC_013204:2955500:297178429717842972371588Eggerthella lenta DSM 2243, complete genomeNusB antitermination factor1e-1582
NC_015738:629297:648993648993649520528Eggerthella sp. YY7918, complete genometranscription termination factor3e-1580.5
NC_010516:1999500:201488720148872015318432Clostridium botulinum B1 str. Okra, complete genomeN utilization substance protein B4e-1580.1
NC_009699:2056500:207190720719072072338432Clostridium botulinum F str. Langeland chromosome, complete genometranscription antitermination protein NusB4e-1580.1
NC_017297:2054000:207200520720052072436432Clostridium botulinum F str. 230613 chromosome, complete genomeN utilization substance protein B4e-1580.1
NC_018607:805966:816447816447816971525Brachyspira pilosicoli B2904 chromosome, complete genometranscription antitermination protein NusB1e-1375.1
NC_014330:609982:629102629102629626525Brachyspira pilosicoli 95/1000 chromosome, complete genometranscription antitermination protein NusB1e-1375.1
NC_013169:1290000:130395113039511304364414Kytococcus sedentarius DSM 20547, complete genomeNusB antitermination factor2e-1374.7
NC_016048:2243108:224439022443902244842453Oscillibacter valericigenes Sjm18-20, complete genomeantitermination protein NusB2e-1374.3
NC_014972:847099:851362851362851784423Desulfobulbus propionicus DSM 2032 chromosome, complete genomeNusB antitermination factor4e-1373.6
NC_018604:2053585:207551220755122076036525Brachyspira pilosicoli WesB complete genometranscription antitermination protein NusB5e-1373.2
NC_014638:1509637:151431515143151514986672Bifidobacterium bifidum PRL2010 chromosome, complete genomen utilization substance protein B NusB1e-1168.6
NC_013124:1784117:180047118004711800908438Acidimicrobium ferrooxidans DSM 10331, complete genomeNusB antitermination factor2e-1167.8
NC_010830:475248:4891174891174902531137Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein4e-1166.6
NC_011661:1049767:106035510603551060789435Dictyoglomus turgidum DSM 6724, complete genomeNusB antitermination factor1e-1065.5
NC_015557:558127:563075563075563494420Hydrogenobaculum sp. 3684 chromosome, complete genomeNusB antitermination factor2e-1064.7
NC_015587:558180:563128563128563547420Hydrogenobaculum sp. SHO chromosome, complete genomeNusB antitermination factor2e-1064.7
NC_020411:558153:563101563101563520420Hydrogenobaculum sp. HO, complete genomeNusB antitermination factor2e-1064.7
NC_014652:1758787:176014817601481760552405Caldicellulosiruptor hydrothermalis 108 chromosome, completenusb antitermination factor9e-1062.4
NC_016783:1313008:135085713508571351456600Corynebacterium diphtheriae INCA 402 chromosome, complete genomeN utilization substance protein B-like protein9e-1062.4
NC_016788:1315877:132596813259681326567600Corynebacterium diphtheriae HC04 chromosome, complete genomeN utilization substance protein B9e-1062.4
NC_016802:1317365:132745713274571328056600Corynebacterium diphtheriae HC02 chromosome, complete genomeN utilization substance protein B9e-1062.4
NC_002935:1315019:135286613528661353414549Corynebacterium diphtheriae NCTC 13129, complete genometranscription antitermination protein NusB9e-1062.4
NC_017259:480656:487019487019487450432Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,transcription antitermination protein NusB8e-1062.4
NC_016782:1316467:132655813265581327157600Corynebacterium diphtheriae 241 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016786:1316436:132652813265281327127600Corynebacterium diphtheriae HC01 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016787:1276983:131597613159761316575600Corynebacterium diphtheriae HC03 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016790:1259356:129335812933581293957600Corynebacterium diphtheriae VA01 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016785:1297208:130814113081411308740600Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016789:1334514:137236513723651372964600Corynebacterium diphtheriae PW8 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016800:1344189:135512213551221355721600Corynebacterium diphtheriae BH8 chromosome, complete genomeN utilization substance protein B1e-0962
NC_016801:1361597:137168513716851372284600Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeN utilization substance protein B1e-0962
NC_016799:1343020:138201013820101382609600Corynebacterium diphtheriae 31A chromosome, complete genomeN utilization substance protein B1e-0962
NC_011126:555483:574205574205574624420Hydrogenobaculum sp. Y04AAS1, complete genomeNusB antitermination factor3e-0960.8
NC_011244:94756:117305117305117745441Borrelia recurrentis A1, complete genometranscription antitermination protein NusB3e-0960.8
NC_014532:3036109:304138330413833041883501Halomonas elongata DSM 2581, complete genometranscription antitermination protein NusB4e-0960.5
NC_010003:1052997:107106710710671071522456Petrotoga mobilis SJ95, complete genomeNusB antitermination factor4e-0960.1
NC_020181:2714559:275404027540402754459420Enterobacter aerogenes EA1509E, complete genomeTranscription termination protein NusB6e-0959.7
NC_014833:2225233:223197722319772232390414Ruminococcus albus 7 chromosome, complete genomeNusB antitermination factor9e-0958.9
NC_010475:953618:961936961936962577642Synechococcus sp. PCC 7002, complete genometranscription antitermination factor NusB9e-0958.9
NC_004061:498483:509330509330509758429Buchnera aphidicola str. Sg (Schizaphis graminum), complete genometranscription antitermination protein NusB2e-0857.8
NC_006576:1743500:176353217635321764173642Synechococcus elongatus PCC 6301, complete genometranscription antitermination protein NusB3e-0857.4
NC_015499:119200:130723130723131127405Thermodesulfobium narugense DSM 14796 chromosome, complete genomeNusB antitermination factor8e-0855.8
NC_018691:896464:922490922490922969480Alcanivorax dieselolei B5 chromosome, complete genometranscription antitermination protein NusB9e-0855.8
NC_002528:505951:508106508106508537432Buchnera aphidicola str. APS (Acyrthosiphon pisum), completetranscription antitermination protein NusB1e-0755.1
NC_019940:203718:220653220653221168516Thioflavicoccus mobilis 8321 chromosome, complete genometranscription antitermination factor NusB3e-0650.4
NC_015731:169989:170468170468170968501Nitrosomonas sp. Is79A3 chromosome, complete genomeNusB antitermination factor7e-0649.3