Pre_GI: BLASTP Hits

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Query: NC_013410:3358008:3362526 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3362526, End: 3363419, Length: 894

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015571:1495286:150725115072511508159909Porphyromonas gingivalis TDC60, complete genomehypothetical protein2e-34146
NC_002950:353549:367963367963368871909Porphyromonas gingivalis W83, complete genomehypothetical protein2e-34146
NC_010729:1818500:1822068182206818231411074Porphyromonas gingivalis ATCC 33277, complete genomeconserved hypothetical protein with integral membrane domain DUF63e-34145
NC_015425:2144639:218068521806852181578894Clostridium botulinum BKT015925 chromosome, complete genomeintegral membrane protein3e-24112
NC_015589:2209011:222207522220752223019945Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein6e-24111
NC_008593:1917118:195568019556801956573894Clostridium novyi NT, complete genomeIntegral membrane protein, putative3e-22105
NC_013939:1812259:183215018321501833049900Deferribacter desulfuricans SSM1, complete genomedrug/metabolite transporter4e-2098.6
NC_012225:1015452:101545210154521016309858Brachyspira hyodysenteriae WA1, complete genomehypothetical protein8e-1994.4
NC_014150:1006000:101636510163651017222858Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF6 transmembrane9e-1994.4
NC_008255:1500067:151718115171811518089909Cytophaga hutchinsonii ATCC 33406, complete genomepermease, DMT superfamily1e-1893.6
NC_021171:4588792:459100545910054591931927Bacillus sp. 1NLA3E, complete genomehypothetical protein4e-1789
NC_012491:743883:745860745860746762903Brevibacillus brevis NBRC 100599, complete genomehypothetical protein2e-1583.2
NC_014614:2333890:233493423349342335860927Clostridium sticklandii, complete genomeconserved membrane protein of unknown function2e-1377
NC_004757:427483:431853431853432797945Nitrosomonas europaea ATCC 19718, complete genomeIntegral membrane protein, DUF62e-1376.6
NC_019964:3028469:306100930610093061875867Halovivax ruber XH-70, complete genomeputative permease, DMT superfamily8e-1167.8
NC_014758:245707:246976246976247845870Calditerrivibrio nitroreducens DSM 19672 chromosome, completehypothetical protein1e-1067.4
NC_015152:1230995:124803412480341248969936Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein4e-1065.5
NC_016629:3543432:354626335462633547159897Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein7e-1064.7
NC_021182:1188000:119757811975781198474897Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease6e-0961.6
NC_002939:579087:602546602546603472927Geobacter sulfurreducens PCA, complete genomehypothetical protein6e-0961.6
NC_020272:20435:284262842629337912Bacillus amyloliquefaciens IT-45, complete genomepermease3e-0859.7
NC_020410:3868573:388088938808893881800912Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative permease3e-0859.7
NC_015379:4249238:425521242552124256129918Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein4e-0858.9
NC_007503:2010858:201156320115632012489927Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein8e-0858.2
NC_019842:3921424:393535939353593936270912Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,permease8e-0858.2
NC_004578:4781326:480547748054774806364888Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-0757.4
NC_014034:1418681:144397314439731444884912Rhodobacter capsulatus SB1003 chromosome, complete genomehypothetical protein2e-0757
NC_016830:2642881:266016526601652661082918Pseudomonas fluorescens F113 chromosome, complete genomedrug/metabolite transporter permease2e-0756.6
NC_012691:241404:264240264240265127888Tolumonas auensis DSM 9187, complete genomeprotein of unknown function DUF6 transmembrane3e-0756.2
NC_005773:4539751:455323445532344554130897Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein5e-0755.5
NC_006347:700838:722107722107723057951Bacteroides fragilis YCH46, complete genomeputative permease5e-0755.5
NC_003228:648669:669932669932670882951Bacteroides fragilis NCTC 9343, complete genomeputative transmembrane protein4e-0755.5
NC_016633:541559:554861554861555790930Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDMT(drug/metabolite transporter) superfamily permease4e-0755.5
NC_015637:325561:339503339503340402900Vibrio anguillarum 775 chromosome chromosome II, complete sequencedrug/metabolite exporter family transporter1e-0654.3
NC_009348:1968826:198698619869861987906921Aeromonas salmonicida subsp. salmonicida A449, complete genomeDMT family permease1e-0654.3
NC_019942:1270060:128308712830871283968882Aciduliprofundum sp. MAR08-339, complete genomeputative permease1e-0653.9
NC_014924:2399524:2429846242984624308561011Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeprotein of unknown function DUF6 transmembrane2e-0653.5
NC_017191:3901914:391095039109503911831882Bacillus amyloliquefaciens XH7 chromosome, complete genomepermease2e-0653.1
NC_017188:3900951:390925839092583910139882Bacillus amyloliquefaciens TA208 chromosome, complete genomeputative permease2e-0653.1
NC_016047:683368:699679699679700581903Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeeama family transporter2e-0653.1
NC_008711:424482:429761429761430702942Arthrobacter aurescens TC1, complete genomeputative Integral membrane protein DUF63e-0652.8
NC_004722:1033000:104632110463211047262942Bacillus cereus ATCC 14579, complete genomeTransporter, Drug/Metabolite Exporter family3e-0652.8
NC_011725:1055552:107215910721591073097939Bacillus cereus B4264 chromosome, complete genometransporter Drug/Metabolite Exporter family3e-0652.8
NC_014171:1043961:105860510586051059546942Bacillus thuringiensis BMB171 chromosome, complete genomedrug/metabolite exporter family protein3e-0652.8
NC_020210:3341976:334533733453373346269933Geobacillus sp. GHH01, complete genomehypothetical protein7e-0651.6
NC_020210:2969862:299402729940272994935909Geobacillus sp. GHH01, complete genomeputative transporter1e-0551.2