Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3338596 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3338596, End: 3340785, Length: 2190

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013406:303218:3165803165803200263447Paenibacillus sp. Y412MC10 chromosome, complete genomeAAA ATPase1e-39165
NC_011830:2177187:2179254217925421827063453Desulfitobacterium hafniense DCB-2, complete genomeAAA ATPase1e-40168
NC_009617:2355662:2378460237846023808862427Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeATPase AAA7e-56219
NC_014625:1187608:1201521120152112038692349Ketogulonicigenium vulgare Y25 chromosome, complete genomehypothetical protein3e-56220
NC_008358:263458:2710992710992734802382Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein2e-50201
NC_010125:1:86486427801917Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein2e-1172
NC_011963:1482042:149578214957821496045264Rhodobacter sphaeroides KD131 chromosome 1, complete sequencehypothetical protein9e-0756.2
NC_011071:4235830:4245301424530142475382238Stenotrophomonas maltophilia R551-3, complete genomehypothetical protein1e-59231
NC_013282:1842412:1851731185173118529541224Cronobacter turicensis, complete genomehypothetical protein9e-54212
NC_014391:4672105:4698117469811747003062190Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein4e-0860.5
NC_012483:1813521:1821329182132918236112283Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein2e-0655.1
NC_011883:1422650:1433575143357514358962322Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein3e-68260
NC_015844:3779500:3782924378292437852602337Zobellia galactanivorans, complete genomehypothetical protein9e-55215
NC_007509:71954:8692186921891852265Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein1e-0862
NC_008825:3161146:318079831807983181532735Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-0655.5
NC_011027:1153592:1160277116027711625802304Chlorobaculum parvum NCIB 8327, complete genomehypothetical protein5e-43176
NC_010623:2057467:2064532206453220669702439Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein8e-1169.7
NC_017271:3057161:3071364307136430736522289Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein1e-0655.8