Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3281250 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3281250, End: 3282287, Length: 1038

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009468:38112:445074450745445939Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceHolliday junction DNA helicase RuvB9e-80297
NC_009053:313779:313779313779314663885Actinobacillus pleuropneumoniae L20, complete genomeholliday junction ATP-dependent DNA helicase RuvB3e-93342
NC_010278:315941:316686316686317570885Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,Holliday junction DNA helicase RuvB3e-93342
NC_010939:321492:321492321492321905414Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeholliday junction ATP-dependent DNA helicase RuvB9e-29127
NC_010939:321492:321863321863322495633Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeholliday junction ATP-dependent DNA helicase RuvB6e-60231
NC_010655:2000025:2020324202032420217151392Akkermansia muciniphila ATCC BAA-835, complete genomeAAA ATPase central domain protein7e-0755.1
NC_015422:3836911:3840668384066838419871320Alicycliphilus denitrificans K601 chromosome, complete genomeAAA ATPase central domain-containing protein2e-0757
NC_013385:1617338:1617338161733816183811044Ammonifex degensii KC4, complete genomeHolliday junction DNA helicase RuvB6e-101367
NC_007410:112074:1271491271491293682220Anabaena variabilis ATCC 29413 plasmid A, complete sequenceATPase7e-1065.1
NC_011725:4373721:4375612437561243768981287Bacillus cereus B4264 chromosome, complete genomerecombination factor protein RarA3e-0652.8
NC_015634:2445396:2451654245165424529821329Bacillus coagulans 2-6 chromosome, complete genomeAAA ATPase central domain-containing protein2e-1066.6
NC_016023:2163000:2187760218776021890881329Bacillus coagulans 36D1 chromosome, complete genomeAAA ATPase central domain-containing protein2e-1066.6
NC_006347:143876:1737681737681747961029Bacteroides fragilis YCH46, complete genomeHolliday junction DNA helicase RuvB4e-103374
NC_004663:1499145:1501726150172615029941269Bacteroides thetaiotaomicron VPI-5482, complete genomeputative ATPase, AAA family3e-0653.1
NC_009614:4802000:4821014482101448222911278Bacteroides vulgatus ATCC 8482 chromosome, complete genomerecombination factor protein RarA4e-0652.4
NC_020300:960692:9626369626369639731338Bartonella australis Aust/NH1, complete genomerecombination factor protein RarA2e-0860.5
NC_008783:145305:1613761613761624851110Bartonella bacilliformis KC583, complete genomeHolliday junction DNA helicase RuvB3e-94345
NC_014932:985882:1013177101317710144931317Bartonella clarridgeiae 73, complete genomeATPase, AAA family3e-0859.7
NC_005956:1139342:1139342113934211406611320Bartonella henselae str. Houston-1, complete genomeATPase, aaa family6e-0962
NC_005955:947500:9492919492919506101320Bartonella quintana str. Toulouse, complete genomeATPase, aaa family2e-0757.4
NC_006156:17637:2092020920219631044Borrelia garinii PBi chromosome linear, complete sequenceHolliday junction DNA helicase RuvB7e-91334
NC_019908:2247956:2265103226510322661371035Brachyspira pilosicoli P43/6/78 chromosome, complete genomeHolliday junction DNA helicase RuvB4e-93341
NC_009074:2914053:2932477293247729337871311Burkholderia pseudomallei 668 chromosome I, complete sequenceATPase, AAA family1e-0654.7
NC_014720:1737574:1755901175590117569171017Caldicellulosiruptor kronotskyensis 2002 chromosome, completeholliday junction DNA helicase ruvb2e-96352
NC_009714:671897:6752696752696762911023Campylobacter hominis ATCC BAA-381, complete genomeHolliday junction DNA helicase RuvB3e-87322
NC_010830:384812:3903403903403916351296Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein5e-0858.9
NC_011565:69427:7356973569748851317Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,hypothetical protein8e-1065.1
NC_019815:114288:1169181169181182731356Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiATPase3e-0963.2
NC_014774:1210004:1210004121000412110381035Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeHolliday junction DNA helicase RuvB7e-91334
NC_015391:695350:7105567105567115691014Carnobacterium sp. 17-4 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB3e-97355
NC_015167:2068607:2092254209225420932761023Cellulophaga lytica DSM 7489 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB3e-102372
NC_015744:367142:3661843661843671881005Chlamydia trachomatis L2c chromosome, complete genomeholliday junction DNA helicase RuvB2e-91336
NC_014328:1286407:1298694129869413000101317Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative helicase subunit of Holliday junction resolvase7e-1065.1
NC_014328:3682000:3694379369437936954251047Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeHolliday junction DNA helicase8e-104377
NC_021182:2422226:2426485242648524277861302Clostridium pasteurianum BC1, complete genomeAAA ATPase2e-0860.8
NC_016782:1359000:1367281136728113683691089Corynebacterium diphtheriae 241 chromosome, complete genomeholliday junction DNA helicase RuvB1e-92340
NC_016799:1343020:1420602142060214216901089Corynebacterium diphtheriae 31A chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB2e-92339
NC_016800:1378728:1393743139374313948311089Corynebacterium diphtheriae BH8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB2e-92339
NC_016801:1361597:1410279141027914113671089Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_016785:1321700:1346763134676313478511089Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB2e-92339
NC_016786:1359064:1367251136725113683391089Corynebacterium diphtheriae HC01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_016802:1317365:1366071136607113671591089Corynebacterium diphtheriae HC02 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB2e-92339
NC_016787:1350676:1360358136035813614461089Corynebacterium diphtheriae HC03 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_016788:1349500:1363861136386113649491089Corynebacterium diphtheriae HC04 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_016783:1374464:1389459138945913905471089Corynebacterium diphtheriae INCA 402 chromosome, complete genomeholliday junction DNA helicase RuvB2e-92339
NC_002935:1378566:1392938139293813940261089Corynebacterium diphtheriae NCTC 13129, complete genomeHolliday junction DNA helicase RuvB1e-92340
NC_016789:1334514:1410959141095914120471089Corynebacterium diphtheriae PW8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_016790:1319060:1336426133642613375141089Corynebacterium diphtheriae VA01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-92340
NC_013939:1812259:1827873182787318289041032Deferribacter desulfuricans SSM1, complete genomeHolliday junction DNA helicase RuvB6e-102370
NC_013552:207345:215255215255216193939Dehalococcoides sp. VS, complete genomeHolliday junction DNA helicase2e-0860.8
NC_018515:989616:9937159937159950131299Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeAAA ATPase3e-0653.1
NC_016629:3396500:3412795341279534140751281Desulfovibrio africanus str. Walvis Bay chromosome, completeAAA ATPase2e-1067
NC_011883:1478173:149611814961181497101984Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Holliday junction DNA helicase RuvB1e-96353
NC_002937:1764117:1764863176486317660981236Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeATPase, AAA family5e-0858.9
NC_014836:497350:4993134993135005751263Desulfurispirillum indicum S5 chromosome, complete genomeAAA ATPase central domain-containing protein4e-1066.2
NC_006831:1112000:111505811150581116053996Ehrlichia ruminantium str. Gardel, complete genomeHolliday junction DNA helicase RuvB9e-79293
NC_005295:1146500:114656811465681147563996Ehrlichia ruminantium str. Welgevonden, complete genomeHolliday junction DNA helicase RuvB9e-79293
NC_006832:1125000:112516711251671126162996Ehrlichia ruminantium str. Welgevonden, complete genomeHolliday junction DNA helicase RuvB9e-79293
CU928160:1978500:2008255200825520092651011Escherichia coli IAI1 chromosome, complete genomeATP-dependent DNA helicase, component of RuvABC resolvasome9e-103373
NC_011741:1978500:2008255200825520092651011Escherichia coli IAI1 chromosome, complete genomeHolliday junction DNA helicase RuvB9e-103373
NC_013364:2355298:2385022238502223860321011Escherichia coli O111:H- str. 11128, complete genomeATP-dependent DNA helicase RuvB9e-103373
NC_013361:2591829:2621552262155226225621011Escherichia coli O26:H11 str. 11368 chromosome, complete genomeHolliday junction DNA helicase RuvB9e-103373
NC_009483:1636189:1651634165163416526501017Geobacter uraniireducens Rf4 chromosome, complete genomeHolliday junction DNA helicase RuvB3e-101368
NC_015510:1012195:1032257103225710335341278Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAAA ATPase central domain-containing protein8e-0755.1
NC_019978:1816940:1835838183583818371481311Halobacteroides halobius DSM 5150, complete genomeAAA ATPase6e-1685.1
NC_015318:249445:252338252338253306969Hippea maritima DSM 10411 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB5e-104377
NC_013174:1459730:1466263146626314673211059Jonesia denitrificans DSM 20603, complete genomeHolliday junction DNA helicase RuvB4e-93341
NC_012785:205502:2265092265092277921284Kosmotoga olearia TBF 19.5.1, complete genomeAAA ATPase central domain protein5e-0858.9
NC_014554:1339566:1342528134252813438771350Lactobacillus plantarum subsp. plantarum ST-III chromosome,replication-associated recombination protein A3e-0859.7
NC_013656:2505783:2527407252740725284081002Lactococcus lactis subsp. lactis KF147, complete genomeHolliday junction DNA helicase RuvB2e-89328
NC_013192:305478:3318033318033328161014Leptotrichia buccalis DSM 1135, complete genomeHolliday junction DNA helicase RuvB4e-100364
NC_016751:1524848:1547492154749215487181227Marinitoga piezophila KA3 chromosome, complete genomeAAA ATPase1e-0964.3
NC_011757:276953:2972412972412985631323Methylobacterium chloromethanicum CM4, complete genomeAAA ATPase central domain protein9e-0858.2
NC_012808:157156:1748231748231761661344Methylobacterium extorquens AM1, complete genomerecombination protein8e-0858.2
NC_010172:280092:3085273085273098401314Methylobacterium extorquens PA1, complete genomeAAA ATPase central domain protein8e-0858.2
NC_010725:356609:3711753711753724971323Methylobacterium populi BJ001, complete genomeAAA ATPase central domain protein1e-0757.4
NC_010505:1581429:1597413159741315987561344Methylobacterium radiotolerans JCM 2831, complete genomeAAA ATPase central domain protein6e-1065.5
NC_011896:563641:5824045824045834531050Mycobacterium leprae Br4923, complete genomeHolliday junction helicase component2e-91336
NC_002677:563500:5823955823955834441050Mycobacterium leprae TN, complete genomeHolliday junction DNA helicase RuvB2e-91336
NC_002946:684728:6886516886516899611311Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein1e-0757.4
NC_011035:968569:9832579832579845671311Neisseria gonorrhoeae NCCP11945 chromosome, complete genomerecombination factor protein RarA1e-0757.4
NC_017511:884083:8993468993469006561311Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomerecombination factor protein RarA1e-0757.4
NC_013960:1484824:1489599148959914914101812Nitrosococcus halophilus Nc4 chromosome, complete genomeAAA ATPase central domain protein9e-1168.2
NC_007484:130896:1520651520651531111047Nitrosococcus oceani ATCC 19707, complete genomeHolliday junction DNA helicase RuvB2e-98358
NC_014315:114151:1368211368211378671047Nitrosococcus watsoni C-113 chromosome, complete genomeHolliday junction DNA helicase RuvB4e-98358
NC_004757:230541:2479192479192489591041Nitrosomonas europaea ATCC 19718, complete genomeHolliday junction DNA helicase RuvB7e-104377
NC_015222:386000:4036034036034046491047Nitrosomonas sp. AL212 chromosome, complete genomeHolliday junction DNA helicase RuvB2e-100365
NC_015731:402280:4075894075894086351047Nitrosomonas sp. Is79A3 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB5e-103374
NC_009488:1430693:145910014591001460077978Orientia tsutsugamushi str. Boryong, complete genomeHolliday junction DNA helicase RuvB9e-88323
NC_014622:724000:7265717265717278991329Paenibacillus polymyxa SC2 chromosome, complete genomeATPase AAA2e-0963.9
NC_009454:1042592:1058294105829410593191026Pelotomaculum thermopropionicum SI, complete genomeHolliday junction DNA helicase RuvB8e-104377
NC_010003:1444623:1462656146265614637111056Petrotoga mobilis SJ95, complete genomeHolliday junction DNA helicase RuvB2e-101369
NC_017080:166180:1829761829761840251050Phycisphaera mikurensis NBRC 102666, complete genomeHolliday junction ATP-dependent DNA helicase RuvB4e-88325
NC_019960:659756:6773676773676786771311Prevotella dentalis DSM 3688 chromosome 1, complete sequenceAAA ATPase2e-0860.5
NC_009091:1514770:1529915152991515309731059Prochlorococcus marinus str. MIT 9301, complete genomeHolliday junction DNA helicase RuvB7e-72271
NC_008820:211616:2116162116162128121197Prochlorococcus marinus str. MIT 9303, complete genomeHolliday junction DNA helicase RuvB8e-84310
NC_005071:172364:1749461749461760041059Prochlorococcus marinus str. MIT 9313, complete genomeHolliday junction DNA helicase RuvB7e-84310
NC_008817:1574506:1589665158966515907231059Prochlorococcus marinus str. MIT 9515, complete genomeHolliday junction DNA helicase RuvB6e-74278
NC_014039:1238500:1262426126242612634481023Propionibacterium acnes SK137 chromosome, complete genomeHolliday junction DNA helicase RuvB2e-85316
NC_016002:1326500:1352971135297113542901320Pseudogulbenkiania sp. NH8B, complete genomeAAA ATPase central domain containing protein1e-0654.7
NC_018080:4465618:4486258448625844873161059Pseudomonas aeruginosa DK2 chromosome, complete genomeHolliday junction DNA helicase RuvB6e-101367
NC_011770:4763506:4785044478504447861021059Pseudomonas aeruginosa LESB58, complete genomeHolliday junction DNA helicase RuvB6e-101367
NC_002516:1031386:1052289105228910533471059Pseudomonas aeruginosa PAO1, complete genomeHolliday junction DNA helicase RuvB6e-101367
NC_008463:4566976:4598188459818845992461059Pseudomonas aeruginosa UCBPP-PA14, complete genomeHolliday junction DNA helicase RuvB6e-101367
NC_004129:5481629:5500653550065355017111059Pseudomonas fluorescens Pf-5, complete genomeHolliday junction DNA helicase RuvB6e-98357
NC_002947:4484824:4510462451046245117871326Pseudomonas putida KT2440, complete genomeATPase, AAA family8e-0961.6
NC_015733:3736104:3833202383320238345271326Pseudomonas putida S16 chromosome, complete genomerecombination factor protein RarA2e-0860.5
NC_014924:1701952:1705407170540717067171311Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeAAA ATPase central domain protein4e-0652.4
NC_014307:1131241:1137988113798811392921305Ralstonia solanacearum CFBP2957 chromosome, complete genomereplicatioN-associated recombination protein a2e-0963.5
NC_015977:2565922:2570688257068825720131326Roseburia hominis A2-183 chromosome, complete genomerecombination factor protein RarA6e-1065.5
NC_011094:1050700:1050700105070010520431344Salmonella enterica subsp. enterica serovar Schwarzengrund strrecombination factor protein RarA6e-0858.9
NC_007384:1355060:1355060135506013560701011Shigella sonnei Ss046, complete genomeHolliday junction helicase subunit A9e-103373
NC_013165:2700978:2705543270554327068621320Slackia heliotrinireducens DSM 20476, complete genomeRecombination protein MgsA1e-0964.3
NC_015732:1507473:1516186151618615173431158Spirochaeta caldaria DSM 7334 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB1e-89329
NC_008022:35983:545835458355581999Streptococcus pyogenes MGAS10270, complete genomeHolliday junction DNA helicase ruvB1e-96353
NC_008024:35948:5561555615566851071Streptococcus pyogenes MGAS10750, complete genomeHolliday junction DNA helicase ruvB1e-96353
NC_008023:35663:5411354113551831071Streptococcus pyogenes MGAS2096, complete genomeHolliday junction DNA helicase ruvB3e-96352
NC_007296:35661:5381953819548891071Streptococcus pyogenes MGAS6180, complete genomeHolliday junction DNA helicase RuvB2e-96352
NC_003485:35971:5443154431554951065Streptococcus pyogenes MGAS8232, complete genomeHolliday junction DNA helicase RuvB6e-96350
NC_008021:35661:5413954139552091071Streptococcus pyogenes MGAS9429, complete genomeholliday junction DNA helicase3e-96352
NC_008532:1769733:176973317697331770689957Streptococcus thermophilus LMD-9, complete genomeHolliday junction resolvasome, helicase subunit2e-93342
NC_006448:1709523:1711466171146617124671002Streptococcus thermophilus LMG 18311, complete genomeHolliday junction DNA helicase RuvB5e-94344
NC_010730:180000:185113185113186087975Sulfurihydrogenibium sp. YO3AOP1, complete genomeHolliday junction DNA helicase RuvB9e-83307
NC_008319:2172928:2195117219511721973182202Synechococcus sp. CC9311, complete genomeATPase9e-0961.6
NC_007516:2090901:2110344211034421125092166Synechococcus sp. CC9605, complete genomeATPase1e-0757.8
NC_007759:723675:7485817485817496031023Syntrophus aciditrophicus SB, complete genomeholliday junction DNA helicase2e-99362
NC_016610:383000:3992763992764003071032Tannerella forsythia ATCC 43037 chromosome, complete genomeHolliday junction DNA helicase RuvB9e-102370
NC_015519:1205049:1212339121233912136761338Tepidanaerobacter sp. Re1 chromosome, complete genomeAAA ATPase central domain-containing protein7e-0858.5
NC_015519:1205049:122736912273691228367999Tepidanaerobacter sp. Re1 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB6e-99360
NC_016052:2201211:2206167220616722071741008Tetragenococcus halophilus NBRC 12172, complete genomeHolliday junction ATP-dependent DNA helicase RuvB7e-97354
NC_014377:1335963:1338607133860713396231017Thermosediminibacter oceani DSM 16646 chromosome, complete genomeHolliday junction DNA helicase subunit RuvB2e-103376
NC_014377:669216:6692166692166705561341Thermosediminibacter oceani DSM 16646 chromosome, complete genomeRecombination protein MgsA4e-0859.3
NC_007404:1570000:1586860158686015881881329Thiobacillus denitrificans ATCC 25259, complete genomeputative helicase ATPase2e-0757
NC_015577:2081196:2125494212549421278212328Treponema azotonutricium ZAS-9 chromosome, complete genomeATPase1e-0654.7
NC_015578:2428500:2443206244320624442851080Treponema primitia ZAS-2 chromosome, complete genomeholliday junction DNA helicase RuvB6e-86317
NC_011374:202936:2226702226702238961227Ureaplasma urealyticum serovar 10 str. ATCC 33699 chromosome,recombination factor protein RarA5e-0755.5
NC_015759:760671:7654467654467667681323Weissella koreensis KACC 15510 chromosome, complete genomerecombination factor protein RarA1e-0654.7
NC_010981:1053533:105501610550161056005990Wolbachia pipientis, complete genomeHolliday junction DNA helicase RuvB2e-80299
NC_010513:1128000:1149471114947111505021032Xylella fastidiosa M12 chromosome, complete genomeHolliday junction DNA helicase RuvB4e-96351
NC_014041:595464:6164086164086174301023Zunongwangia profunda SM-A87 chromosome, complete genomeHolliday junction DNA helicase B2e-99362