Pre_GI: BLASTP Hits

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Query: NC_013410:3192836:3208124 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3208124, End: 3209452, Length: 1329

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020291:552104:5682575682575696001344Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeTldD/PmbA family protein3e-45183
NC_016641:5808113:5809721580972158110641344Paenibacillus terrae HPL-003 chromosome, complete genomeZn-dependent protease5e-45182
NC_010674:426256:4459544459544472971344Clostridium botulinum B str. Eklund 17B, complete genomeTldD/PmbA family protein1e-42174
NC_010723:420025:4407604407604421031344Clostridium botulinum E3 str. Alaska E43, complete genomeTldD/PmbA family protein3e-42172
NC_008261:381297:3859853859853873341350Clostridium perfringens ATCC 13124, complete genomeTldD/PmbA family protein3e-36153
NC_008262:381323:3884113884113897601350Clostridium perfringens SM101, complete genomeTldD/PmbA family protein6e-36152
NC_013642:505518:5244775244775257841308Thermotoga naphthophila RKU-10, complete genomepeptidase U62 modulator of DNA gyrase9e-35148
NC_011978:1812000:1813092181309218143961305Thermotoga neapolitana DSM 4359, complete genomePmbA-related protein8e-31135
NC_015216:2276929:2291858229185822931621305Methanobacterium sp. AL-21 chromosome, complete genomepeptidase U62 modulator of DNA gyrase6e-30132
NC_013457:979102:9916979916979930401344Vibrio sp. Ex25 chromosome 2, complete genomepredicted Zn-dependent protease1e-29130
NC_015707:826649:8468988468988482231326Thermotoga thermarum DSM 5069 chromosome, complete genomepeptidase U62 modulator of DNA gyrase3e-28126
NC_013894:543901:5456305456305469521323Thermocrinis albus DSM 14484 chromosome, complete genomepeptidase U62 modulator of DNA gyrase6e-27122
NC_010003:1242846:1249401124940112507351335Petrotoga mobilis SJ95, complete genomepeptidase U62 modulator of DNA gyrase8e-27122
NC_010730:1519458:1530420153042015317481329Sulfurihydrogenibium sp. YO3AOP1, complete genomepeptidase U62 modulator of DNA gyrase1e-24114
NC_014910:1200605:1203139120313912045601422Alicycliphilus denitrificans BC chromosome, complete genomepeptidase u62 modulator of DNA gyrase3e-24113
NC_010120:788000:8082748082748096051332Neisseria meningitidis 053442, complete genomepmbA protein2e-24113
NC_003552:4054908:4054908405490840562271320Methanosarcina acetivorans C2A, complete genomePmbA/TldD family protein2e-24113
NC_009655:866281:8695768695768709311356Actinobacillus succinogenes 130Z chromosome, complete genomepeptidase U62 modulator of DNA gyrase2e-24113
NC_017512:760000:7795607795607808911332Neisseria meningitidis WUE 2594, complete genomeputative PmbA-like protein1e-23111
NC_003116:988000:1008771100877110101021332Neisseria meningitidis Z2491, complete genomehypothetical protein1e-23111
NC_011979:1683964:1705965170596517073471383Geobacter sp. FRC-32, complete genomepeptidase U62 modulator of DNA gyrase1e-23111
NC_017505:841496:8620538620538633841332Neisseria meningitidis alpha710 chromosome, complete genomePmbA protein2e-23110
NC_003112:844000:8650308650308663611332Neisseria meningitidis MC58, complete genomepmbA protein1e-22108
NC_017515:1429317:1429317142931714306481332Neisseria meningitidis M04-240196 chromosome, complete genomeprotein PmbA1e-22108
NC_017517:867595:8880708880708894011332Neisseria meningitidis M01-240355 chromosome, complete genomeprotein PmbA1e-22108
NC_009708:483253:5033115033115046511341Yersinia pseudotuberculosis IP 31758 chromosome, complete genomepeptidase PmbA5e-22105
NC_003143:4105754:4125645412564541269851341Yersinia pestis CO92, complete genomePutative modulator of DNA gyrase2e-21104
NC_009381:321577:3414693414693428091341Yersinia pestis Pestoides F chromosome, complete genomepeptidase PmbA2e-21104
NC_014029:4057696:4077587407758740789271341Yersinia pestis Z176003 chromosome, complete genomePutative modulator of DNA gyrase2e-21104
NC_017154:3997810:4017701401770140190411341Yersinia pestis D106004 chromosome, complete genomePutative modulator of DNA gyrase2e-21104
NC_017168:1729922:1749813174981317511531341Yersinia pestis A1122 chromosome, complete genomepeptidase PmbA2e-21104
NC_013407:1610221:1630496163049616317491254Methanocaldococcus vulcanius M7, complete genomepeptidase U62 modulator of DNA gyrase6e-21102
NC_007354:569321:5878725878725892061335Ehrlichia canis str. Jake, complete genomePeptidase U62, modulator of DNA gyrase2e-20100
NC_004347:4211241:4231892423189242332351344Shewanella oneidensis MR-1, complete genomepmba protein5e-2099.4
NC_006831:664000:6782586782586796251368Ehrlichia ruminantium str. Gardel, complete genomePmbA protein homolog5e-1995.9
NC_003552:4054908:4056220405622040575751356Methanosarcina acetivorans C2A, complete genomePmbA/TldD family protein7e-1995.5
NC_012559:1663214:1664482166448216655791098Laribacter hongkongensis HLHK9, complete genomePmbA2e-1894.4
NC_007973:2773427:2795043279504327964101368Ralstonia metallidurans CH34 chromosome 1, complete sequencepeptidase U62, modulator of DNA gyrase4e-1893.2
NC_007799:647514:6535166535166548621347Ehrlichia chaffeensis str. Arkansas, complete genomepmbA protein4e-1892.8
NC_014658:620819:6216416216416229331293Methanothermus fervidus DSM 2088 chromosome, complete genomepeptidase u62 modulator of DNA gyrase4e-1892.8
NC_006833:902744:9174909174909188241335Wolbachia endosymbiont strain TRS of Brugia malayi, completeInactivated homolog of predicted Zn-dependent protease, PmbA4e-1892.8
NC_005295:689500:7027857027857041521368Ehrlichia ruminantium str. Welgevonden, complete genomeputative PmbA protein6e-1892.4
NC_006832:668913:6826316826316839981368Ehrlichia ruminantium str. Welgevonden, complete genomePmbA protein homolog6e-1892.4
NC_000911:2747604:2760689276068927620291341Synechocystis sp. PCC 6803, complete genomehypothetical protein9e-1891.7
NC_017039:2745432:2758517275851727598571341Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein9e-1891.7
NC_017052:2745420:2758505275850527598451341Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein9e-1891.7
NC_017277:2746421:2759506275950627608461341Synechocystis sp. PCC 6803, complete genomehypothetical protein9e-1891.7
NC_006624:1952554:1951190195119019525571368Thermococcus kodakarensis KOD1, complete genomezinc-dependent protease, TldD/PmbA family1e-1791.3
NC_016051:1385490:1405654140565414070151362Thermococcus sp. AM4 chromosome, complete genomeTldD/PmbA family zinc-dependent protease1e-1791.3
NC_014122:842560:8550218550218562501230Methanocaldococcus infernus ME chromosome, complete genomepeptidase U62 modulator of DNA gyrase3e-1789.7
NC_014006:63000:8400884008853541347Sphingobium japonicum UT26S chromosome 1, complete genomeputative Zn-dependent protease PmbA5e-1685.9
NC_006677:2042387:2044485204448520458161332Gluconobacter oxydans 621H, complete genomePmbA protein1e-1481.6
NC_010003:1242846:1247989124798912494011413Petrotoga mobilis SJ95, complete genomepeptidase U62 modulator of DNA gyrase3e-1480.1
NC_017150:2689920:2706848270684827083051458Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_013209:2782500:2799102279910228005591458Acetobacter pasteurianus IFO 3283-01, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017100:2782303:2798894279889428003511458Acetobacter pasteurianus IFO 3283-03, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017108:2779303:2796231279623127976881458Acetobacter pasteurianus IFO 3283-12, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017111:2779321:2796249279624927977061458Acetobacter pasteurianus IFO 3283-32, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017121:2781000:2797651279765127991081458Acetobacter pasteurianus IFO 3283-07, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017125:2782283:2798874279887428003311458Acetobacter pasteurianus IFO 3283-22, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_017146:2782325:2798916279891628003731458Acetobacter pasteurianus IFO 3283-26, complete genomeDNA gyrase modulator TldD2e-1377.8
NC_006624:1952554:1952554195255419538431290Thermococcus kodakarensis KOD1, complete genomezinc-dependent protease, TldD/PmbA family2e-1377
NC_013771:684966:7096017096017109411341Cyanobacterium UCYN-A, complete genomepredicted Zn-dependent protease-like protein3e-1376.6
NC_000961:1366000:1387847138784713891841338Pyrococcus horikoshii OT3, complete genomehypothetical protein7e-1375.5
NC_015707:826649:8455138455138469011389Thermotoga thermarum DSM 5069 chromosome, complete genomemicrocin-processing peptidase 21e-1275.1
NC_016641:5808113:5811068581106858124621395Paenibacillus terrae HPL-003 chromosome, complete genomepeptidase u62 modulator of DNA gyrase2e-1273.9
NC_008319:1167213:1184118118411811855631446Synechococcus sp. CC9311, complete genomeTldD protein3e-1273.6
NC_003413:1448377:1470356147035614716841329Pyrococcus furiosus DSM 3638, complete genomehypothetical protein4e-1273.2
NC_014540:2908912:2921753292175329231111359Burkholderia sp. CCGE1003 chromosome 2, complete sequencepeptidase U62 modulator of DNA gyrase7e-1272
NC_010723:420025:4393744393744407561383Clostridium botulinum E3 str. Alaska E43, complete genomeTldD protein1e-1171.2
NC_006576:456569:4739624739624754311470Synechococcus elongatus PCC 6301, complete genomeputative modulator of DNA gyrase TldD1e-1171.2
NC_007604:1145373:1145373114537311468421470Synechococcus elongatus PCC 7942, complete genomeputative modulator of DNA gyrase; TldD1e-1171.2
NC_013926:1166454:1183525118352511848261302Aciduliprofundum boonei T469 chromosome, complete genomepeptidase U62 modulator of DNA gyrase2e-1170.9
NC_008261:381297:3845843845843859691386Clostridium perfringens ATCC 13124, complete genomeTldD/PmbA family protein3e-1170.1
NC_008319:1167213:1182748118274811840941347Synechococcus sp. CC9311, complete genometldD/pmbA family protein4e-1169.7
NC_020291:552104:5668695668695682541386Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeprotein TldD5e-1169.3
NC_012668:160357:1872221872221886671446Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTldD protein probably a protease6e-1169.3
NC_002578:828000:8684178684178697091293Thermoplasma acidophilum DSM 1728, complete genomehypothetical protein6e-1168.9
NC_010674:426256:4445684445684459501383Clostridium botulinum B str. Eklund 17B, complete genomeTldD protein6e-1168.9
NC_015942:2544407:2546427254642725478721446Acidithiobacillus ferrivorans SS3 chromosome, complete genomepeptidase U62 modulator of DNA gyrase1e-1068.6
NC_016051:1385490:1407021140702114083281308Thermococcus sp. AM4 chromosome, complete genomeTldD/PmbA family zinc-dependent protease1e-1067.8
NC_008262:381323:3870103870103883951386Clostridium perfringens SM101, complete genometldD protein truncated2e-1067.4
NC_014323:3195178:3210664321066432120371374Herbaspirillum seropedicae SmR1 chromosome, complete genomeZn-dependent protease TLDE protein3e-1066.6
NC_016816:1545354:1548358154835815497071350Pantoea ananatis LMG 5342, complete genomemicrocin-processing peptidase 14e-1066.6
NC_013642:505518:5230925230925244801389Thermotoga naphthophila RKU-10, complete genomepeptidase U62 modulator of DNA gyrase4e-1066.2
NC_011978:1812000:1814393181439318158081416Thermotoga neapolitana DSM 4359, complete genomeTldD protein6e-1065.9
NC_007513:1126914:1132046113204611334581413Synechococcus sp. CC9902, complete genomeputative modulator of DNA gyrase; TldD1e-0965.1
NC_015633:2919501:2937237293723729386821446Vibrio anguillarum 775 chromosome chromosome I, complete sequenceMicrocin-processing peptidase 21e-0964.7
NC_005125:637333:6511216511216524251305Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-0964.3
NC_000854:50407:6401264012653611350Aeropyrum pernix K1, complete genomeprobable peptidase1e-0861.6
NC_014540:2908912:2923270292327029247541485Burkholderia sp. CCGE1003 chromosome 2, complete sequencepeptidase U62 modulator of DNA gyrase1e-0861.6
NC_015222:2136657:2160899216089921623741476Nitrosomonas sp. AL212 chromosome, complete genomepeptidase U62 modulator of DNA gyrase1e-0861.2
NC_005070:1144777:1187537118753711889461410Synechococcus sp. WH 8102, complete genomeputative modulator of DNA gyrase; TldD2e-0860.8
NC_005071:835005:8392978392978407421446Prochlorococcus marinus str. MIT 9313, complete genomeputative modulator of DNA gyrase; TldD2e-0860.8
NC_005070:1144777:1186170118617011875341365Synechococcus sp. WH 8102, complete genomepossible modulator of DNA gyrase2e-0860.5
NC_008312:1725763:1740339174033917417961458Trichodesmium erythraeum IMS101, complete genomepeptidase U62, modulator of DNA gyrase3e-0860.1
NC_014323:3195178:3209126320912632106311506Herbaspirillum seropedicae SmR1 chromosome, complete genomeZn-dependent protease TldD protein2e-0757.4
NC_016816:1545354:1549725154972515511821458Pantoea ananatis LMG 5342, complete genomeantibiotic maturation peptidase2e-0757.4
NC_009465:224564:2295482295482309751428Candidatus Vesicomyosocius okutanii HA, complete genomePmbA/TldD family DNA gyrase modulator3e-0757
NC_007513:1126914:1133461113346111348281368Synechococcus sp. CC9902, complete genomepossible modulator of DNA gyrase4e-0756.2
NC_003413:1448377:1468976146897614703431368Pyrococcus furiosus DSM 3638, complete genomehypothetical TLDD protein5e-0756.2
NC_012623:1563678:1572579157257915738081230Sulfolobus islandicus Y.N.15.51 chromosome, complete genomepeptidase U62 modulator of DNA gyrase7e-0755.8
NC_005071:835005:8407428407428421301389Prochlorococcus marinus str. MIT 9313, complete genomepossible modulator of DNA gyrase9e-0755.1
NC_002578:828000:8670538670538684201368Thermoplasma acidophilum DSM 1728, complete genomehypothetical protein1e-0654.7