Pre_GI: BLASTP Hits

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Query: NC_013410:3192836:3207424 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3207424, End: 3207714, Length: 291

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009767:2866668:287592928759292876252324Roseiflexus castenholzii DSM 13941, complete genomeExcinuclease ABC C subunit domain protein8e-2199
NC_015638:2588954:260368026036802603982303Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeExcinuclease ABC C subunit domain-containing protein7e-2095.9
NC_017025:1735835:174555617455561745864309Flavobacterium indicum GPTSA100-9, complete genomehypothetical protein3e-1890.1
NC_014761:1405408:141413814141381414419282Oceanithermus profundus DSM 14977 chromosome, complete genomeexcinuclease ABC c subunit domain protein3e-1890.1
NC_009720:2424975:243072724307272431023297Xanthobacter autotrophicus Py2, complete genomeexcinuclease ABC subunit C4e-1890.1
NC_008750:1659095:166454716645471664855309Shewanella sp. W3-18-1, complete genomeExcinuclease ABC, C subunit domain protein5e-1889.7
NC_008750:1659095:167439716743971674699303Shewanella sp. W3-18-1, complete genomeExcinuclease ABC, C subunit domain protein1e-1788.6
NC_009438:2939478:293947829394782939780303Shewanella putrefaciens CN-32 chromosome, complete genomeexcinuclease ABC subunit C1e-1788.6
NC_019904:5241444:526542852654285265733306Echinicola vietnamensis DSM 17526 chromosome, complete genomeendonuclease containing a URI domain1e-1788.2
NC_014761:1795304:180840118084011808682282Oceanithermus profundus DSM 14977 chromosome, complete genomeexcinuclease ABC c subunit domain protein2e-1788.2
NC_015581:1043394:105239210523921052676285Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeExcinuclease ABC C subunit domain-containing protein1e-1685.1
NC_016610:609961:612219612219612920702Tannerella forsythia ATCC 43037 chromosome, complete genomeGIY-YIG catalytic domain-containing protein4e-1683.6
NC_015177:1476073:149578214957821496099318Pedobacter saltans DSM 12145 chromosome, complete genomeExcinuclease ABC C subunit domain protein4e-1683.2
NC_008245:1625715:164604016460401646324285Francisella tularensis subsp. tularensis FSC 198, complete genomeEndonuclease6e-1682.8
NC_006570:1625909:164623416462341646518285Francisella tularensis subsp. tularensis Schu 4, complete genomeEndonuclease6e-1682.8
NC_016933:1702500:172198417219841722268285Francisella tularensis TIGB03 chromosome, complete genomeExcinuclease ABC C subunit-like protein6e-1682.8
NC_016937:1625752:164607716460771646361285Francisella tularensis subsp. tularensis TI0902 chromosome,Excinuclease ABC C subunit-like protein6e-1682.8
NC_014965:2954876:296158129615812961865285Vibrio vulnificus MO6-24/O chromosome I, complete sequenceexcinuclease ABC C subunit-like protein1e-1581.6
NC_004459:767127:773834773834774118285Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted endonuclease3e-1580.5
NC_013171:1364464:137480013748001375090291Anaerococcus prevotii DSM 20548, complete genomeExcinuclease ABC C subunit domain protein4e-1580.1
NC_007109:1105251:111997211199721120274303Rickettsia felis URRWXCal2, complete genomeExcinuclease ABC, C subunit, N-terminal6e-1579.3
NC_015731:3658956:367158936715893671888300Nitrosomonas sp. Is79A3 chromosome, complete genomeExcinuclease ABC C subunit domain-containing protein8e-1579
NC_002696:3759551:376187837618783762249372Caulobacter crescentus CB15, complete genomehypothetical protein2e-1373.9
NC_015638:1824794:183982118398211840108288Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeExcinuclease ABC C subunit domain-containing protein4e-1063.5
NC_012121:113912:132481132481132741261Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative nuclease3e-0650.4
NC_009922:315870:335768335768336031264Alkaliphilus oremlandii OhILAs, complete genomeExcinuclease ABC C subunit domain protein6e-0649.7