Pre_GI: BLASTP Hits

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Query: NC_013410:3017983:3038408 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3038408, End: 3039916, Length: 1509

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:1038500:1046997104699710485201524Pectobacterium wasabiae WPP163, complete genomeArabinogalactan endo-1,4-beta-galactosidase9e-40165
NC_012917:833721:8612678612678627901524Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeArabinogalactan endo-1,4-beta-galactosidase1e-39164
NC_004547:913553:9430259430259445481524Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative exported plant proteoglycan hydrolase9e-39161
NC_020272:2748733:2748733274873327498451113Bacillus amyloliquefaciens IT-45, complete genomearabinogalactan endo-1,4-beta-galactosidase2e-37157
NC_009725:1159637:1180093118009311812051113Bacillus amyloliquefaciens FZB42, complete genomeGanA2e-37157
NC_020410:1123121:1147771114777111488831113Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeGanA2e-37157
NC_014551:1279229:1306421130642113075391119Bacillus amyloliquefaciens DSM 7, complete genomesecreted arabinogalactan oligomer endo-hydrolase3e-37156
NC_017188:2172706:2174807217480721759251119Bacillus amyloliquefaciens TA208 chromosome, complete genomesecreted arabinogalactan oligomer endo-hydrolase3e-37156
NC_017190:1196356:1223560122356012246781119Bacillus amyloliquefaciens LL3 chromosome, complete genomesecreted arabinogalactan oligomer endo-hydrolase3e-37156
NC_017191:2174741:2176842217684221779601119Bacillus amyloliquefaciens XH7 chromosome, complete genomearabinogalactan endo-1,4-beta-galactosidase3e-37156
NC_019842:1203291:1224811122481112259231113Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,GanA3e-37156
NC_017168:144000:1657971657971669991203Yersinia pestis A1122 chromosome, complete genomeputative galactosidase1e-35151
NC_009381:720000:7417767417767429781203Yersinia pestis Pestoides F chromosome, complete genomegalactosidase1e-35151
NC_014393:1782811:1790663179066317948084146Clostridium cellulovorans 743B chromosome, complete genomeLPXTG-motif cell wall anchor domain-containing protein2e-34147
NC_015977:2309873:2328049232804923291221074Roseburia hominis A2-183 chromosome, complete genomearabinogalactan endo-1,4-beta-galactosidase2e-33143
NC_009848:3582384:3582384358238435835921209Bacillus pumilus SAFR-032, complete genomearabinogalactan endo-1,4-beta-galactosidase3e-33143
NC_014221:2188250:2197714219771421988381125Truepera radiovictrix DSM 17093 chromosome, complete genomeArabinogalactan endo-1,4-beta-galactosidase7e-33142
NC_008061:2106848:2136731213673121378941164Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceArabinogalactan endo-1,4-beta-galactosidase4e-32139
NC_008543:127675:1318771318771330401164Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceArabinogalactan endo-1,4-beta-galactosidase4e-32139
NC_014622:3525017:3547732354773235487841053Paenibacillus polymyxa SC2 chromosome, complete genomearabinogalactan endo-1,4-beta-galactosidase4e-28126
NC_014483:3235968:3257348325734832584001053Paenibacillus polymyxa E681 chromosome, complete genomeArabinogalactan endo-1,4-beta-galactosidase4e-27122
NC_013172:466300:4718044718044734771674Brachybacterium faecium DSM 4810, complete genomearabinogalactan endo-1,4-beta-galactosidase1e-26121
NC_015275:882022:8862768862768900733798Clostridium lentocellum DSM 5427 chromosome, complete genomeArabinogalactan endo-1,4-beta-galactosidase4e-25116
NC_014933:3637172:3642122364212236433091188Bacteroides helcogenes P 36-108 chromosome, complete genomeArabinogalactan endo-1,4-beta-galactosidase9e-25115
NC_013174:2321000:2323584232358423246781095Jonesia denitrificans DSM 20603, complete genomeArabinogalactan endo-1,4-beta-galactosidase9e-25115
NC_016593:956839:9715029715029739462445Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein1e-24114
NC_017271:4193000:4213292421329242142931002Xanthomonas campestris pv. raphani 756C chromosome, completearabinogalactan endo-1,4-beta-galactosidase3e-24113
NC_010688:673454:6780016780016790021002Xanthomonas campestris pv. campestris, complete genomeexported arabinogalactan endo-1,4-beta-galactosidase1e-23111
NC_004663:6104875:6118695611869561197561062Bacteroides thetaiotaomicron VPI-5482, complete genomearabinogalactan endo-1,4-beta-galactosidase1e-23111
NC_016010:637535:6421136421136431141002Xanthomonas axonopodis pv. citrumelo F1 chromosome, completearabinogalactan endo-1,4-beta-galactosidase2e-23110
NC_017271:1517820:1539758153975815409661209Xanthomonas campestris pv. raphani 756C chromosome, completearabinogalactan endo-1,4-beta-galactosidase3e-22107
NC_007508:689046:6890466890466905811536Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomearabinogalactan endo-1,4-beta-galactosidase precursor6e-22105
NC_003919:1491001:1508458150845815096691212Xanthomonas axonopodis pv. citri str. 306, complete genomearabinogalactan endo-1,4-beta-galactosidase6e-21102
NC_007508:1517393:1534486153448615356971212Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative galactosidase precursor1e-20101
NC_013172:466300:4734744734744746731200Brachybacterium faecium DSM 4810, complete genomearabinogalactan endo-1,4-beta-galactosidase4e-1893.2
NC_015977:2309873:232438723243872324929543Roseburia hominis A2-183 chromosome, complete genomeArabinogalactan endo-1,4-beta-galactosidase7e-1582.4