Pre_GI: BLASTP Hits

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Query: NC_013410:3017983:3022464 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3022464, End: 3025112, Length: 2649

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012108:2305327:2318006231800623206422637Desulfobacterium autotrophicum HRM2, complete genomeputative type II restriction enzyme (methylase subunit)0881
NC_012704:376783:3861253861253889562832Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein0813
NC_000964:732255:7396277396277422662640Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein0812
NC_014219:830966:8394848394848421412658Bacillus selenitireducens MLS10 chromosome, complete genomeputative type II restriction enzyme (methylase subunit)0793
NC_012880:3529017:3539696353969635423112616Dickeya dadantii Ech703, complete genomehypothetical protein0741
NC_008782:2683989:2696611269661126993972787Acidovorax sp. JS42, complete genomeputative DNA methylase0683
NC_008786:1936626:1946427194642719492132787Verminephrobacter eiseniae EF01-2, complete genomeputative DNA methylase0671
NC_008463:1293079:1317407131740713201872781Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible Type II restriction enzyme, methylase subunit0660
NC_011206:1233985:1253707125370712565052799Acidithiobacillus ferrooxidans ATCC 53993, complete genomeputative DNA methylase0660
NC_009656:5475540:5494372549437254971522781Pseudomonas aeruginosa PA7 chromosome, complete genometype II restriction enzyme methylase subunit0655
NC_015947:1877887:1882995188299518857872793Burkholderia sp. JV3 chromosome, complete genomeputative DNA methylase0650
NC_014618:1103239:1134884113488411376492766Enterobacter cloacae SCF1 chromosome, complete genomeDNA methylase1e-177624
NC_013730:2359939:2370629237062923733852757Spirosoma linguale DSM 74, complete genometype II restriction enzyme, methylase subunit1e-177624
NC_010688:2781624:2795588279558827979902403Xanthomonas campestris pv. campestris, complete genomeSite-specific DNA-methyltransferase (adenine-specific)2e-176619
NC_011757:3486283:3500179350017935029682790Methylobacterium chloromethanicum CM4, complete genometype II restriction enzyme, methylase subunit6e-175615
NC_007794:262402:2760732760732788022730Novosphingobium aromaticivorans DSM 12444, complete genometype II restriction enzyme, methylase subunit2e-172607
NC_008343:1699132:1699132169913217019482817Granulibacter bethesdensis CGDNIH1, complete genomeDNA modification methyltransferase-related protein4e-171602
NC_011758:247666:2548172548172576302814Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completemethylase2e-164580
NC_013203:202008:2020082020082047672760Atopobium parvulum DSM 20469, complete genometype II restriction enzyme methylase subunits- like protein1e-141504
NC_014246:496976:5079835079835108322850Mobiluncus curtisii ATCC 43063 chromosome, complete genomemethylase2e-134480
NC_003116:1734000:1734140173414017365512412Neisseria meningitidis Z2491, complete genomehypothetical protein4e-134479
NC_009077:2308634:2345951234595123487402790Mycobacterium sp. JLS, complete genomehypothetical protein6e-128459
NC_011881:1:1060810608134752868Arthrobacter chlorophenolicus A6 plasmid pACHL02, completehypothetical protein1e-125451
NC_009339:252174:2550092550092578132805Mycobacterium gilvum PYR-GCK plasmid pMFLV01, complete sequencehypothetical protein3e-118427
NC_012704:1870000:1907089190708919099532865Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein5e-116419
NC_013442:6586:3705337053398782826Gordonia bronchialis DSM 43247 plasmid pGBRO01, complete sequencehypothetical protein3e-114413
NC_012590:284793:2948972948972962011305Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein2e-104380
NC_010545:11950:2111721117229401824Corynebacterium urealyticum DSM 7109, complete genomeputative methylase3e-82307
NC_012590:284793:2921782921782932781101Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein1e-80301
NC_010545:11950:3814838148400881941Corynebacterium urealyticum DSM 7109, complete genomeputative methylase6e-74279
NC_010610:2013659:202617820261782027152975Lactobacillus fermentum IFO 3956, complete genomehypothetical protein7e-58226
NC_003902:2469500:248713224871322487965834Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein4e-48193
NC_010815:40357:4147441474442302757Geobacter lovleyi SZ plasmid pGLOV01, complete sequencehypothetical protein1e-39166
NC_003911:2042389:2047955204795520508522898Silicibacter pomeroyi DSS-3, complete genomehypothetical protein3e-37157
NC_017080:1981788:1992712199271219961883477Phycisphaera mikurensis NBRC 102666, complete genomerestriction endonuclease/modification methylase2e-29131
NC_007802:3252300:3271614327161432742232610Jannaschia sp. CCS1, complete genomehypothetical protein2e-1792
NC_008358:1623278:1632909163290916349872079Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein1e-1482.4
NC_010545:11950:421014210142448348Corynebacterium urealyticum DSM 7109, complete genomeputative methylase2e-1275.1
NC_010545:11950:206502065020997348Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein8e-1273.2
NC_009073:696663:7050637050637065771515Pyrobaculum calidifontis JCM 11548, complete genomeN-6 DNA methylase8e-1273.2
NC_008639:1462000:1480653148065314845013849Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein4e-1067.8
NC_020156:2750000:2753388275338827566093222Nonlabens dokdonensis DSW-6, complete genometype II restriction enzyme, methylase2e-0965.5
NC_015673:289578:296349296349296702354Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein2e-0965.5
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase3e-0964.7
NC_014330:609982:6197376197376224572721Brachyspira pilosicoli 95/1000 chromosome, complete genomefused endonuclease-methyltransferase3e-0861.2
NC_002689:676728:6813376813376843603024Thermoplasma volcanium GSS1, complete genomeType II restriction enzyme, methylase subunit4e-0860.8
NC_008262:419726:425575425575425802228Clostridium perfringens SM101, complete genomehypothetical protein8e-0860.1
NC_019792:3446895:3458347345834734612862940Natronobacterium gregoryi SP2 chromosome, complete genometype I restriction-modification system methyltransferase subunit1e-0759.7
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase1e-0759.3
NC_013768:1802313:1807158180715818090681911Listeria monocytogenes 08-5923, complete genomeN-6 DNA methylase7e-0757
NC_013766:1835964:1840427184042718423371911Listeria monocytogenes 08-5578 chromosome, complete genomeN-6 DNA methylase7e-0757
NC_018604:2053585:2065813206581320686502838Brachyspira pilosicoli WesB complete genomefused endonuclease-methyltransferase1e-0655.8
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase7e-0653.5
NC_004463:925140:9283659283659322703906Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein9e-0653.1