Pre_GI: BLASTP Hits

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Query: NC_013410:2691437:2711650 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2711650, End: 2712309, Length: 660

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016609:7565483:758021775802177580828612Niastella koreensis GR20-10 chromosome, complete genomeHAD-superfamily hydrolase2e-22105
NC_013132:782846:786635786635787249615Chitinophaga pinensis DSM 2588, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 32e-22105
NC_014933:901897:911981911981912610630Bacteroides helcogenes P 36-108 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 32e-1892.8
NC_013892:202778:224222224222224881660Xenorhabdus bovienii SS-2004 chromosome, complete genomephosphatase-like domain-containing protein5e-1477.8
NC_005363:2172444:218416721841672184772606Bdellovibrio bacteriovorus HD100, complete genomeputative haloacid dehalogenase-like hydrolase6e-1477.8
NC_013282:4312791:433241243324124333011600Cronobacter turicensis, complete genomePhosphatase yihX9e-1373.6
NC_019904:3127945:313029731302973130929633Echinicola vietnamensis DSM 17526 chromosome, complete genomehaloacid dehalogenase superfamily protein3e-1272
NC_004088:4202247:422097542209754221565591Yersinia pestis KIM, complete genomephosphatase5e-1271.2
NC_017265:4065625:408435340843534084943591Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,phosphatase5e-1271.2
NC_011080:4177443:419707741970774197676600Salmonella enterica subsp. enterica serovar Newport str. SL254,phosphatase YihX8e-1270.5
NC_010067:3538169:356629935662993566898600Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1270.5
NC_008800:36500:406484064841235588Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,phosphatase1e-1066.6
NC_002939:579087:600586600586601209624Geobacter sulfurreducens PCA, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 34e-0858.2
NC_013406:4323338:433363143336314334227597Paenibacillus sp. Y412MC10 chromosome, complete genomeHAD-superfamily hydrolase4e-0755.1
NC_018750:6132619:614899861489986149627630Streptomyces venezuelae ATCC 10712, complete genomeHAD-superfamily hydrolase subfamily IA, variant 31e-0653.5