Pre_GI: BLASTP Hits

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Query: NC_013410:2691437:2697672 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2697672, End: 2700119, Length: 2448

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012108:1694817:1701074170107417036442571Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-86320
NC_017068:1450049:1457174145717414597442571Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein1e-28129
NC_015682:1074263:1093771109377110961672397Thermodesulfobacterium sp. OPB45 chromosome, complete genomehypothetical protein1e-28128
NC_017378:986611:9942389942389964482211Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein4e-24114
NC_006513:2708213:2716488271648827189502463Azoarcus sp. EbN1, complete genomehypothetical protein5e-24113
NC_013411:2191514:2193597219359721952761680Geobacillus sp. Y412MC61, complete genomeATPase associated with various cellular activities AAA_52e-23112
NC_014915:1331459:1333542133354213352211680Geobacillus sp. Y412MC52 chromosome, complete genomeATPase associated with various cellular activities AAA_52e-23112
NC_017379:996500:1004179100417910063802202Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein2e-23111
NC_016593:1466226:1474111147411114757901680Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete5-methylcytosine-specific restriction enzyme2e-23111
NC_006510:1400000:1400171140017114018501680Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-23111
NC_014206:2266000:2283940228394022856191680Geobacillus sp. C56-T3 chromosome, complete genomeATPase AAA2e-23111
NC_015958:1465631:1494003149400314957541752Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeATPase1e-22109
NC_010170:4463000:4509133450913345117692637Bordetella petrii, complete genomehypothetical protein1e-22108
NC_015680:21500:2998029980319111932Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein1e-22108
NC_014209:1392115:1392115139211513938661752Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,ATPase associated with various cellular activities AAA_52e-22108
NC_010002:4572573:4584629458462945872712643Delftia acidovorans SPH-1, complete genomeChromosome segregation ATPase-like protein2e-22108
NC_020210:1275031:1275031127503112767101680Geobacillus sp. GHH01, complete genomehypothetical protein2e-22108
NC_011770:2499432:2506736250673625088982163Pseudomonas aeruginosa LESB58, complete genomeGTPase subunit of restriction endonuclease-like8e-22106
NC_007907:808893:8140608140608167232664Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-21103
NC_014152:421481:4447174447174467562040Thermincola sp. JR, complete genomeATPase associated with various cellular activities AAA_57e-21103
NC_013851:3321853:3334777333477733369632187Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein1e-20102
NC_011092:9974:1823718237204442208Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-20102
NC_013406:1217385:1248785124878512510072223Paenibacillus sp. Y412MC10 chromosome, complete genomeATPase3e-20101
NC_009338:5537473:5548514554851455496291116Mycobacterium gilvum PYR-GCK chromosome, complete genomeATPase AAA1e-1999.4
NC_007503:1534162:1541898154189815436071710Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein1e-1999
NC_015677:1:1220712207150232817Ramlibacter tataouinensis TTB310 chromosome, complete genome5-methylcytosine-specific restriction enzyme B1e-1895.9
NC_016023:1839503:1847540184754018495672028Bacillus coagulans 36D1 chromosome, complete genomeATPase1e-1895.5
NC_019896:2805098:2813625281362528148811257Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completePutative GTPase subunit of restriction endonuclease4e-1894
NC_005085:1:80928092101042013Chromobacterium violaceum ATCC 12472, complete genomeprobable site-specific DNA-methyltransferase, cytosine-specific4e-1894
NC_000915:453958:4687774687774703331557Helicobacter pylori 26695, complete genomehypothetical protein8e-1892.8
NC_017195:3919000:3935181393518139372022022Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein2e-1792
NC_007512:944941:9581049581049599241821Pelodictyon luteolum DSM 273, complete genomehypothetical protein2e-1791.7
NC_013790:85889:8768487684904522769Methanobrevibacter ruminantium M1 chromosome, complete genomehypothetical protein3e-1791.3
NC_017355:997089:1005641100564110066841044Helicobacter pylori v225d chromosome, complete genomehypothetical protein1e-1689.4
NC_012973:967380:9750349750349761221089Helicobacter pylori B38 chromosome, complete genome4e-1687.4
NC_015311:1101761:1112932111293211146831752Prevotella denticola F0289 chromosome, complete genomehypothetical protein6e-1687
NC_004603:2235142:2251354225135422538612508Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein5e-1687
NC_012440:1249941:1263636126363612659812346Persephonella marina EX-H1, complete genomehypothetical protein1e-1585.9
NC_015160:1467445:1487840148784014895911752Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative restriction enzyme related protein1e-1585.9
NC_009659:3815966:3823708382370838253331626Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein1e-1585.9
NC_015977:3215770:3228792322879232309722181Roseburia hominis A2-183 chromosome, complete genomeATPase2e-1585.1
NC_008025:1588348:1593014159301415951642151Deinococcus geothermalis DSM 11300, complete genomeATPase associated with various cellular activities, AAA_56e-1583.6
NC_017098:986428:1006003100600310078201818Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein4e-1480.9
NC_013132:3704288:3710156371015637114661311Chitinophaga pinensis DSM 2588, complete genomehypothetical protein3e-1274.3
NC_015740:2614317:2622730262273026252372508Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-1172
NC_006138:2683545:2720198272019827228042607Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-1068.9