Pre_GI: BLASTP Hits

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Query: NC_013410:2586500:2608776 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2608776, End: 2610182, Length: 1407

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013928:797714:8072328072328084521221Streptococcus mutans NN2025, complete genomepermease9e-72271
NC_013928:797714:8059268059268071461221Streptococcus mutans NN2025, complete genomepermease5e-61235
NC_012925:1357783:1378756137875613799701215Streptococcus suis P1/7, complete genomevoltage gated chloride channel protein6e-52205
NC_009442:1446508:1467483146748314686971215Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein6e-52205
NC_009443:1445936:1466904146690414681181215Streptococcus suis 98HAH33, complete genomehypothetical protein6e-52205
NC_012924:1446190:1467165146716514683791215Streptococcus suis SC84, complete genomevoltage gated chloride channel protein6e-52205
NC_012926:1496510:1517504151750415187181215Streptococcus suis BM407 chromosome, complete genomevoltage gated chloride channel protein6e-52205
NC_003366:728859:7317577317577330701314Clostridium perfringens str. 13, complete genomehypothetical protein1e-30134
NC_008261:676000:6791236791236804361314Clostridium perfringens ATCC 13124, complete genomevoltage-gated chloride channel family protein2e-30134
NC_008262:654000:6569946569946583071314Clostridium perfringens SM101, complete genomeVoltage gated chloride channel family2e-30133
NC_013732:136673:1412531412531426111359Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequenceCl- channel voltage-gated family protein4e-28126
NC_010723:1084000:1086625108662510878811257Clostridium botulinum E3 str. Alaska E43, complete genomevoltage gated chloride channel family4e-26119
NC_010674:1124431:1125509112550911267651257Clostridium botulinum B str. Eklund 17B, complete genomevoltage gated chloride channel family1e-25117
NC_005085:2609934:2611860261186026131761317Chromobacterium violaceum ATCC 12472, complete genomeprobable chloride channel protein EriC1e-24114
NC_020126:117799:1370821370821383951314Myxococcus stipitatus DSM 14675, complete genomeCl- channel voltage-gated family protein6e-23109
NC_016609:1774259:1775725177572517770801356Niastella koreensis GR20-10 chromosome, complete genomeCl- channel voltage-gated family protein1e-21105
NC_010002:1879220:1925073192507319263681296Delftia acidovorans SPH-1, complete genomeChloride channel core2e-21103
NC_015510:1012195:1028814102881410301211308Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeCl- channel voltage-gated family protein2e-21103
NC_012660:2045398:2080357208035720817031347Pseudomonas fluorescens SBW25 chromosome, complete genomeputative chloride transporter-like membrane protein8e-1168.9
NC_007005:1636875:1673655167365516750011347Pseudomonas syringae pv. syringae B728a, complete genomeCl- channel, voltage gated3e-1066.6
NC_004578:5192110:5214210521421052155681359Pseudomonas syringae pv. tomato str. DC3000, complete genomevoltage-gated chloride channel family protein4e-1066.6
NC_020541:2487427:2487427248742724888151389Rhodanobacter sp. 2APBS1, complete genomechloride channel protein EriC3e-0963.5