Pre_GI: BLASTP Hits

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Query: NC_013410:2519441:2548477 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2548477, End: 2549475, Length: 999

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:10950:1583815838169831146Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein3e-34145
NC_009655:1357486:1367284136728413682971014Actinobacillus succinogenes 130Z chromosome, complete genomeXRE family plasmid maintenance system antidote protein2e-31136
NC_011138:3881446:3901794390179439029091116Alteromonas macleodii 'Deep ecotype', complete genomePlasmid maintenance system antidote protein2e-27123
NC_015514:3508022:3528914352891435300111098Cellulomonas fimi ATCC 484 chromosome, complete genomeHigA family addiction module antidote protein8e-23107
NC_017075:3165858:3185220318522031862961077Rubrivivax gelatinosus IL144, complete genometranscriptional regulator, Xre family3e-1995.9
NC_014814:1397429:1409231140923114103311101Mycobacterium sp. Spyr1 chromosome, complete genomeaddiction module antidote protein, HigA family5e-1995.5
NC_018678:87064:8898188981900721092Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein1e-1790.5
NC_007951:4608560:4621065462106546221711107Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein2e-1790.1
NC_015519:270637:2830682830682841591092Tepidanaerobacter sp. Re1 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family1e-1687.8
NC_012778:229503:2377682377682388201053Eubacterium eligens ATCC 27750, complete genomehypothetical protein1e-1687
NC_014618:1103239:1128284112828411293691086Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-1584.3
NC_013740:842841:8727948727948738461053Acidaminococcus fermentans DSM 20731, complete genomeplasmid maintenance system antidote protein, XRE family1e-1584.3
NC_014011:1354261:1358334135833413594551122Aminobacterium colombiense DSM 12261 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-1480.5
NC_011899:2165814:217760721776072178293687Halothermothrix orenii H 168, complete genomeplasmid maintenance system antidote protein, XRE family3e-1479.3
NC_009832:358291:3699623699623710441083Serratia proteamaculans 568, complete genomeprotein of unknown function DUF9556e-1478.6
NC_011884:1665888:1676795167679516778711077Cyanothece sp. PCC 7425, complete genomeplasmid maintenance system antidote protein, XRE family2e-1376.6
NC_011083:4547825:4589922458992245910041083Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,plasmid maintenance system antidote protein, XRE family3e-1272.8
NC_010682:3313944:3320844332084433219741131Ralstonia pickettii 12J chromosome 1, complete sequenceplasmid maintenance system antidote protein, XRE family1e-1067.4
NC_014761:2248000:224929522492952249597303Oceanithermus profundus DSM 14977 chromosome, complete genomeplasmid maintenance system antidote protein, xre family7e-0651.6