Pre_GI: BLASTP Hits

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Query: NC_013410:2037840:2054416 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2054416, End: 2056410, Length: 1995

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008209:761487:7881357881357901862052Roseobacter denitrificans OCh 114, complete genomehypothetical protein2e-40167
NC_012691:1743038:1761063176106317631052043Tolumonas auensis DSM 9187, complete genomeSMC domain protein1e-37158
NC_008212:1295061:1295061129506112970642004Haloquadratum walsbyi DSM 16790, complete genomepredicted ATPase invovled in DNA repair1e-34148
NC_012673:2535427:2542852254285225448702019Exiguobacterium sp. AT1b, complete genomeSMC domain protein1e-33145
NC_019940:2997439:3005190300519030072862097Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein3e-30134
NC_003155:3652587:3664680366468036667342055Streptomyces avermitilis MA-4680, complete genomehypothetical protein4e-28126
NC_009483:2854500:2865874286587428679732100Geobacter uraniireducens Rf4 chromosome, complete genomeSMC domain-containing protein5e-27123
NC_011832:1399446:1417205141720514191961992Candidatus Methanosphaerula palustris E1-9c, complete genomehypothetical protein9e-27122
NC_011768:5900500:5915649591564959177392091Desulfatibacillum alkenivorans AK-01, complete genomehypothetical protein1e-26122
NC_016613:1159980:1172571117257111746342064Vibrio sp. EJY3 chromosome 1, complete sequenceDNA repair ATPase-like protein7e-1479.7
NC_008212:1295061:1304491130449113065542064Haloquadratum walsbyi DSM 16790, complete genomechromosome segregation protein8e-1479.3
NC_017059:2491924:2510874251087425129642091Rhodospirillum photometricum DSM 122, complete genomeABC transporter ATP-binding protein3e-1170.9
NC_009718:518873:5392905392905412181929Fervidobacterium nodosum Rt17-B1, complete genomeSMC domain-containing protein2e-1067.8
NC_013062:1298500:1314231131423113163302100Flavobacteriaceae bacterium 3519-10, complete genomeATPase involved in DNA repair1e-0965.5
NC_015968:511282:5222935222935242691977Enterobacter asburiae LF7a chromosome, complete genomeDNA sulfur modification protein DndD3e-0861.2
NC_009792:3245368:3257136325713632591331998Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0758.9
NC_011768:5900500:5918612591861259205911980Desulfatibacillum alkenivorans AK-01, complete genomeDNA sulfur modification protein DndD4e-0757
NC_011832:1399446:1408047140804714100802034Candidatus Methanosphaerula palustris E1-9c, complete genomeDNA sulfur modification protein DndD5e-0756.6
NC_009712:334143:3510463510463530672022Candidatus Methanoregula boonei 6A8, complete genomeSMC protein-like protein1e-0655.5
NC_009663:738846:7433417433417457072367Sulfurovum sp. NBC37-1, complete genomeDNA double-strand break repair protein2e-0655.1
NC_016610:3297080:3300695330069533028482154Tannerella forsythia ATCC 43037 chromosome, complete genomehypothetical protein4e-0653.5