Pre_GI: BLASTP Hits

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Query: NC_013410:1491000:1502550 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1502550, End: 1502882, Length: 333

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014532:3479674:350205835020583502387330Halomonas elongata DSM 2581, complete genomeK03297 small multidrug resistance protein, SMR family6e-2095.9
NC_021150:68251:753587535875630273Azotobacter vinelandii CA6, complete genomemultidrug efflux SMR transporter2e-1994.4
NC_012560:68251:753587535875630273Azotobacter vinelandii DJ, complete genomemultidrug efflux SMR transporter2e-1994.4
NC_011415:600375:620270620270620602333Escherichia coli SE11 chromosome, complete genomemultidrug efflux protein2e-1994.4
NC_011748:824367:831068831068831400333Escherichia coli 55989, complete genomemultidrug efflux protein2e-1994.4
CU928145:824367:831068831068831400333Escherichia coli 55989 chromosome, complete genomemultidrug resistance protein; DLP12 prophage2e-1994.4
NC_000913:558920:567538567538567870333Escherichia coli K12, complete genomemultidrug efflux protein3e-1993.6
NC_010473:498252:506870506870507202333Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; multidrug resistance protein3e-1993.6
AC_000091:558920:567538567538567870333Escherichia coli W3110 DNA, complete genomemultidrug resistance protein3e-1993.6
NC_012759:461680:470298470298470630333Escherichia coli BW2952 chromosome, complete genomemultidrug efflux protein3e-1993.6
NC_006856:26438:392213922139553333Salmonella enterica subsp. enterica serovar Choleraesuis strquaternary ammonium compound resistance protein7e-1992.4
NC_011353:2957962:297054029705402970872333Escherichia coli O157:H7 str. EC4115 chromosome, complete genomemultidrug efflux protein9e-1992
NC_013008:2910567:292541129254112925743333Escherichia coli O157:H7 str. TW14359 chromosome, complete genomemultidrug efflux protein9e-1992
NC_013941:699286:707659707659707991333Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeEmrE SMR transporter9e-1992
NC_012967:531000:540205540205540537333Escherichia coli B str. REL606 chromosome, complete genomemultidrug efflux protein2e-1891.3
NC_012947:3231893:324514232451423245474333Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completemultidrug efflux protein2e-1891.3
NC_014366:1814000:181793518179351818267333Gamma proteobacterium HdN1, complete genomeQuaternary ammonium compound resistance protein3e-1890.5
NC_017506:971482:974058974058974390333Marinobacter adhaerens HP15 chromosome, complete genomesmall multidrug resistance protein5e-1889.7
NC_011149:1429523:146019614601961460534339Salmonella enterica subsp. enterica serovar Agona str. SL483,multidrug transporter EmrE5e-1889.7
NC_009727:766000:784726784726785052327Coxiella burnetii Dugway 7E9-12, complete genomequaternary ammonium compound-resistance protein qacE6e-1889.4
NC_015761:1630000:163487516348751635213339Salmonella bongori NCTC 12419, complete genomemultidrug transporter1e-1788.6
NC_008800:2298000:229938022993802299712333Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,quaternary ammonium compound-resistance protein1e-1788.6
NC_011294:1465500:148213214821321482470339Salmonella enterica subsp. enterica serovar Enteritidis strmulti-drug transporter2e-1788.2
NC_014310:1822751:186675518667551867099345Ralstonia solanacearum PSI07 megaplasmid, complete sequencesmall multidrug resistance protein4e-1786.7
NC_012808:2886282:289313428931342893478345Methylobacterium extorquens AM1, complete genomesmall multidrug efflux pump, DMT superfamily2e-1684.7
NC_014306:1981956:199145019914501991785336Erwinia billingiae Eb661, complete genomehypothetical protein6e-1682.8
NC_010519:1963256:198089919808991981231333Haemophilus somnus 2336 chromosome, complete genomesmall multidrug resistance protein1e-1581.6
NC_008319:615135:616654616654616983330Synechococcus sp. CC9311, complete genomepossible drug resistance protein2e-1581.3
NC_013209:2248119:229511522951152295453339Acetobacter pasteurianus IFO 3283-01, complete genomequaternary ammonium compound-resistance protein EmrE5e-1579.7
NC_020272:20435:252212522125604384Bacillus amyloliquefaciens IT-45, complete genomeSpermidine export protein mdtJ1e-1478.6
NC_014551:442135:455457455457455807351Bacillus amyloliquefaciens DSM 7, complete genomemetabolite-efflux transporter5e-1476.6
NC_017188:419000:432818432818433180363Bacillus amyloliquefaciens TA208 chromosome, complete genomeYvaE4e-1476.6
NC_017190:424000:437491437491437853363Bacillus amyloliquefaciens LL3 chromosome, complete genomesmall multidrug resistance protein, SMR family4e-1476.6
NC_017191:425000:438728438728439090363Bacillus amyloliquefaciens XH7 chromosome, complete genomemetabolite-efflux transporter4e-1476.6
NC_009952:1680682:170033917003391700668330Dinoroseobacter shibae DFL 12, complete genomeefflux-multidrug resistance protein9e-1475.5
NC_014732:141000:146562146562146894333Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completecation/cationic drug transporter1e-1374.7
NC_019842:3921424:393298739329873933364378Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,Spermidine export protein mdtJ1e-1374.7
NC_014019:3543389:356575035657503566112363Bacillus megaterium QM B1551 chromosome, complete genomemultidrug resistance protein, SMR family2e-1374.3
NC_016641:1369424:137771513777151378086372Paenibacillus terrae HPL-003 chromosome, complete genomemembrane transporter3e-1373.6
NC_014910:2585747:260679326067932607125333Alicycliphilus denitrificans BC chromosome, complete genomesmall multidrug resistance protein6e-1372.8
NC_005061:594500:611253611253611582330Candidatus Blochmannia floridanus, complete genomeemrE protein (methyl viologen resistance protein C) (ethidium resistance protein)6e-1372.8
NC_019962:1909103:192404719240471924379333Natrinema pellirubrum DSM 15624, complete genomecation/cationic drug transporter1e-1272
NC_013768:1802313:181707318170731817396324Listeria monocytogenes 08-5923, complete genomesmall multidrug resistance protein, SMR family2e-1271.2
NC_013766:1835964:185034218503421850665324Listeria monocytogenes 08-5578 chromosome, complete genomesmall multidrug resistance protein, SMR family2e-1271.2
NC_018524:2423016:242748424274842427807324Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomesmall Multidrug Resistance family protein7e-1269.3
NC_010410:3606826:365555836555583655905348Acinetobacter baumannii AYE, complete genomeethidium bromide resistance protein (E1 protein)2e-1167.8
NC_009651:19909:349083490835255348Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,QacEdelta1; small multidrug resistance protein2e-1167.8
NC_011751:4992500:499926549992654999612348Escherichia coli UMN026 chromosome, complete genomeputative ethidium bromide resistance protein2e-1167.8
NC_010410:3606826:365145036514503651797348Acinetobacter baumannii AYE, complete genomeethidium bromide resistance protein (E1 protein)2e-1167.8
NC_010410:3606826:362098136209813621328348Acinetobacter baumannii AYE, complete genomeethidium bromide resistance protein (E1 protein)2e-1167.8
NC_010611:240839:253002253002253349348Acinetobacter baumannii ACICU, complete genomeMembrane transporter of cations and cationic drugs2e-1167.8
NC_009140:121107:133620133620133967348Salmonella enterica enterica sv Newport str. SL254, completequaternary ammonium compound-resistance protein QacEdelta12e-1167.8
NC_014836:2919508:101621016210509348Desulfurispirillum indicum S5 chromosome, complete genomesmall multidrug resistance protein2e-1167.8
NC_006856:26438:264382643826785348Salmonella enterica subsp. enterica serovar Choleraesuis strORF3-QacEdelta1 fusion protein2e-1167.8
NC_017387:247462:278613278613278960348Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomequaternary ammonium compound-resistance protein2e-1167.8
NC_017387:247462:267779267779268126348Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomequaternary ammonium compound-resistance protein2e-1167.8
NC_017171:1331794:134567813456781346025348Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeOrf3/QacEdelta1 fusion protein2e-1167.8
NC_016860:4055117:407591640759164076263348Salmonella enterica subsp. enterica serovar Typhimurium strmultidrug efflux system protein2e-1167.8
NC_009838:81913:104136104136104483348Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencequaternary ammonium compound resistance protein2e-1167.8
NC_010410:3606826:367586536758653676212348Acinetobacter baumannii AYE, complete genomeethidium bromide resistance protein (E1 protein)2e-1167.8
NC_009349:78000:909939099391340348Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completequaternary ammonium compound-resistance protein QacEdelta12e-1167.8
NC_011083:1524337:153030815303081530769462Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,multidrug efflux protein2e-1167.4
NC_020063:3690308:371600337160033716353351Enterobacteriaceae bacterium strain FGI 57, complete genomecation/cationic drug transporter5e-1166.6
NC_014909:619407:624218624218624547330Candidatus Blochmannia vafer str. BVAF chromosome, complete genomequaternary ammonium compound-resistance protein qacE6e-1166.2
NC_006513:1379735:140514514051451405513369Azoarcus sp. EbN1, complete genomehypothetical protein, putative efflux system8e-1165.9
NC_015572:1974000:199254119925411992861321Methylomonas methanica MC09 chromosome, complete genomesmall multidrug resistance protein7e-1062.8
NC_016631:1757788:176772117677211768053333Granulicella mallensis MP5ACTX8 chromosome, complete genomesmall multidrug resistance protein1e-0962
NC_011958:735755:757588757588757875288Rhodobacter sphaeroides KD131 chromosome 2, complete genomeSmall multidrug resistance protein1e-0961.6
NC_008751:1431905:144266114426611442990330Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomesmall multidrug resistance protein2e-0961.2
NC_002937:2068117:207718420771842077513330Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completequaternary ammonium compound-resistance protein QacC, putative2e-0961.2
NC_008391:1210451:121572012157201216064345Burkholderia cepacia AMMD chromosome 2, complete sequencesmall multidrug resistance protein4e-0960.1
NC_013956:3273340:329058332905833290834252Pantoea ananatis LMG 20103 chromosome, complete genomeEmrE5e-0959.7
NC_007514:1475323:148182314818231482149327Chlorobium chlorochromatii CaD3, complete genomeSMR drug efflux transporter8e-0959.3
NC_016830:3230939:324705332470533247370318Pseudomonas fluorescens F113 chromosome, complete genomeSugE protein8e-0958.9
NC_015379:3736500:374577337457733746090318Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative quaternary ammonium compound-resistance protein8e-0958.9
NC_009140:60806:677536775368193441Salmonella enterica enterica sv Newport str. SL254, completequaternary ammonium compound-resistance protein SugE14e-0857
NC_009140:60806:741367413674576441Salmonella enterica enterica sv Newport str. SL254, completequaternary ammonium compound-resistance protein SugE24e-0857
NC_016845:411844:432140432140432457318Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,quarternary ammonium compound transport protein6e-0856.2
NC_012731:403670:423636423636423953318Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomequarternary ammonium compound transport protein6e-0856.2
NC_009648:4958500:497850649785064978823318Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomequarternary ammonium compound transport protein6e-0856.2
NC_013850:4993307:499546149954614995778318Klebsiella variicola At-22 chromosome, complete genomesmall multidrug resistance protein2e-0754.3
NC_011283:5170683:517209251720925172409318Klebsiella pneumoniae 342 chromosome, complete genomequaternary ammonium compound-resistance protein SugE2e-0754.3
NC_003902:555699:575410575410575724315Xanthomonas campestris pv. campestris str. ATCC 33913, completeSugE protein3e-0753.9
NC_007086:557789:577500577500577814315Xanthomonas campestris pv. campestris str. 8004, complete genomeSugE protein3e-0753.9
NC_007333:1457000:146525614652561465570315Thermobifida fusca YX, complete genomesmall multidrug resistance protein, SMR family6e-0752.8
NC_014507:374359:378904378904379236333Methanoplanus petrolearius DSM 11571 chromosome, complete genomesmall multidrug resistance protein7e-0752.8
NC_016612:1840325:186020318602031860520318Klebsiella oxytoca KCTC 1686 chromosome, complete genomesmall multidrug resistance protein1e-0652.4
NC_009253:3272000:327410332741033274423321Desulfotomaculum reducens MI-1 chromosome, complete genomesmall multidrug resistance protein8e-0752.4
NC_006510:591339:632275632275632595321Geobacillus kaustophilus HTA426, complete genomechaperone protein1e-0652
NC_016626:1825845:185346618534661853777312Burkholderia sp. YI23 plasmid byi_1p, complete sequencesmall multidrug resistance protein4e-0650.1
NC_015953:4908069:491158149115814911904324Streptomyces sp. SirexAA-E chromosome, complete genomesmall multidrug resistance protein6e-0649.7
NC_011772:323050:336165336165336488324Bacillus cereus G9842, complete genomemultidrug resistance protein, Smr family8e-0649.3
NC_011725:334000:349955349955350278324Bacillus cereus B4264 chromosome, complete genomemultidrug resistance protein, Smr family8e-0649.3
NC_014171:343834:358649358649358972324Bacillus thuringiensis BMB171 chromosome, complete genomequaternary ammonium8e-0649.3
NC_018080:1730534:173289317328931733207315Pseudomonas aeruginosa DK2 chromosome, complete genometransporter8e-0649.3
NC_020181:3518396:352054735205473520864318Enterobacter aerogenes EA1509E, complete genomeQuaternary ammonium compound-resistance protein sugE8e-0649.3
NC_015663:1934863:195033119503311950648318Enterobacter aerogenes KCTC 2190 chromosome, complete genomesmall multidrug resistance protein7e-0649.3
NC_013744:300000:325888325888326223336Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completesmall multidrug resistance protein6e-0649.3
NC_016745:2028424:206423420642342064563330Oceanimonas sp. GK1 chromosome, complete genomesmall multidrug resistance protein8e-0648.9