Pre_GI: BLASTP Hits

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Query: NC_013410:1285857:1330871 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1330871, End: 1331743, Length: 873

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015687:279641:2900612900612927092649Clostridium acetobutylicum DSM 1731 chromosome, complete genomebifunctional nitrogenase iron molybdenum cofactor biosinthesis protein/nitrogenase molybdenum-iron protein subunit beta, nifB-nitrogenase iron-molybde4e-58224
NC_012881:478042:4829284829284840581131Desulfovibrio salexigens DSM 2638, complete genomeDinitrogenase iron-molybdenum cofactor biosynthesis protein2e-22106
NC_017249:8283701:8331134833113483327171584Bradyrhizobium japonicum USDA 6, complete genomeFeMo cofactor biosynthesis protein3e-52205
NC_004463:1898648:1921859192185919233581500Bradyrhizobium japonicum USDA 110, complete genomeFeMo cofactor biosynthesis protein2e-52205
NC_008278:7409711:7410328741032874117401413Frankia alni ACN14a, complete genomeFeMo cofactor biosynthesis protein nifB3e-52205
NC_014328:2588994:2589918258991825911891272Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeFeMo cofactor biosynthesis protein NifB8e-50197
NC_003030:279643:2900632900632927112649Clostridium acetobutylicum ATCC 824, complete genomeFusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogen4e-58224
NC_017295:279633:2900532900532927012649Clostridium acetobutylicum EA 2018 chromosome, complete genomeFusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molybdenum-iron protein beta chain, nifB-nitrogen4e-58224
NC_007681:1157402:117177711717771172652876Methanosphaera stadtmanae DSM 3091, complete genomehypothetical protein4e-68258
NC_011837:1056888:1058636105863610599071272Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-54210
NC_013665:1922000:195002019500201950916897Methanocella paludicola SANAE, complete genomehypothetical protein1e-61236
NC_011837:3052000:3060143306014330628152673Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-52204
NC_014974:404015:406616406616407593978Thermus scotoductus SA-01 chromosome, complete genomemolybdenum cofactor biosynthesis protein A4e-0652.4
NC_014926:795549:814037814037815008972Thermovibrio ammonificans HB-1 chromosome, complete genomemolybdenum cofactor biosynthesis protein A1e-0860.5
NC_017278:1873934:188957118895711890548978Thermus sp. CCB_US3_UF1 chromosome, complete genomeMolybdenum cofactor biosynthesis protein A3e-0652.8
NC_015474:538544:564907564907565827921Pyrococcus sp. NA2 chromosome, complete genomemolybdenum cofactor biosynthesis protein A8e-0754.7
NC_015216:2548057:256204625620462563008963Methanobacterium sp. AL-21 chromosome, complete genomemolybdenum cofactor biosynthesis protein A9e-0857.8
NC_010529:296500:3291073291073306781572Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNifB FeMo cofactor biosynthesis protein1e-52207
NC_011296:1636242:164071216407121641593882Thermodesulfovibrio yellowstonii DSM 11347, complete genomenitrogen fixation protein4e-54211
NC_014328:522045:5333055333055359922688Clostridium ljungdahlii ATCC 49587 chromosome, complete genomenitrogenase associated protein N2e-51202
NC_010546:553774:5611185611185625901473Cyanothece sp. ATCC 51142 chromosome circular, complete sequencenitrogenase cofactor biosynthesis protein4e-50198
NC_016627:1452688:1463013146301314657152703Clostridium clariflavum DSM 19732 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB3e-58225
NC_011027:1763952:1777887177788717791611275Chlorobaculum parvum NCIB 8327, complete genomenitrogenase cofactor biosynthesis protein NifB2e-56219
NC_014632:1514500:1517028151702815183081281Ilyobacter polytropus DSM 2926 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB6e-55214
NC_013771:684966:6903646903646918391476Cyanobacterium UCYN-A, complete genomenitrogenase cofactor biosynthesis protein NifB3e-50198
NC_014840:286767:3020603020603034631404Pantoea sp. At-9b plasmid pPAT9B03, complete sequencenitrogenase cofactor biosynthesis protein NifB4e-59228
NC_016627:2637226:2647624264762426493361713Clostridium clariflavum DSM 19732 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB5e-55214
NC_016641:2815974:2820042282004228215411500Paenibacillus terrae HPL-003 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB8e-54210
NC_021182:3438601:3444177344417734469662790Clostridium pasteurianum BC1, complete genomenitrogenase cofactor biosynthesis protein NifB4e-55215
NC_014216:2860342:2883867288386728851411275Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB1e-51203
NC_011894:4066926:4081209408120940827051497Methylobacterium nodulans ORS 2060, complete genomenitrogenase cofactor biosynthesis protein NifB6e-50197
NC_011368:678291:6900356900356911261092Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,nitrogenase cofactor biosynthesis protein NifB5e-49194
NC_015656:3300747:3318670331867033203461677Frankia symbiont of Datisca glomerata chromosome, complete genomenitrogenase cofactor biosynthesis protein NifB3e-55215
NC_012881:478042:4780424780424793131272Desulfovibrio salexigens DSM 2638, complete genomenitrogenase cofactor biosynthesis protein NifB4e-49194
NC_011565:777929:7904527904527917111260Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,nitrogenase molybdenum-cofactor biosynthesis protein NifB2e-54212
NC_009767:5230790:524314852431485244089942Roseiflexus castenholzii DSM 13941, complete genomeRadical SAM domain protein1e-68259
NC_015676:1663700:168314916831491684093945Methanosalsum zhilinae DSM 4017 chromosome, complete genomeRadical SAM domain-containing protein7e-69260
NC_009437:2579161:260753926075392608342804Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeradical SAM domain-containing protein3e-49195
NC_018664:2279687:229355622935562294431876Clostridium acidurici 9a chromosome, complete genomeradical SAM domain-containing protein1e-82306
NC_015216:652266:663479663479664330852Methanobacterium sp. AL-21 chromosome, complete genomeRadical SAM domain-containing protein1e-68259
NC_015636:1123053:112694011269401127839900Methanothermococcus okinawensis IH1 chromosome, complete genomeRadical SAM domain-containing protein1e-59229
NC_015574:1676798:168113816811381681989852Methanobacterium sp. SWAN-1 chromosome, complete genomeRadical SAM domain-containing protein7e-69260