Pre_GI: BLASTP Hits

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Query: NC_013410:1255359:1257002 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1257002, End: 1257805, Length: 804

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014355:3398033:341883034188303419594765Candidatus Nitrospira defluvii, complete genomeputative ABC transporter permease3e-43175
NC_008095:7139056:715603971560397156806768Myxococcus xanthus DK 1622, complete genomeputative efflux ABC transporter, permease protein PilI8e-21100
NC_015711:8909256:892627489262748927041768Myxococcus fulvus HW-1 chromosome, complete genomeputative efflux ABC transporter permease PilI9e-2097.4
NC_007498:2475781:249299424929942493806813Pelobacter carbinolicus DSM 2380, complete genomeABC-type transport system, putative ATPase subunit1e-1997.4
NC_002939:1634843:164474416447441645535792Geobacter sulfurreducens PCA, complete genomehypothetical protein1e-1376.6
NC_007517:1561466:156918115691811569996816Geobacter metallireducens GS-15, complete genomehypothetical protein5e-1168.2