Pre_GI: BLASTP Hits

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Query: NC_013410:1203937:1224832 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1224832, End: 1225806, Length: 975

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014033:2080818:2120078212007821210911014Prevotella ruminicola 23 chromosome, complete genomeNAD dependent epimerase/dehydratase family protein5e-89327
NC_009614:3748950:3752489375248937535021014Bacteroides vulgatus ATCC 8482 chromosome, complete genomeUDP-galactose 4-epimerase5e-88324
NC_018515:4334240:4339715433971543407191005Desulfosporosinus meridiei DSM 13257 chromosome, complete genomenucleoside-diphosphate-sugar epimerase2e-77289
NC_009720:3968101:397610439761043977063960Xanthobacter autotrophicus Py2, complete genomeNAD-dependent epimerase/dehydratase5e-49195
NC_016604:1285277:129154612915461292517972Mycobacterium rhodesiae NBB3 chromosome, complete genomenucleoside-diphosphate-sugar epimerase2e-43176
NC_019904:5241444:525005552500555251035981Echinicola vietnamensis DSM 17526 chromosome, complete genomenucleoside-diphosphate-sugar epimerase6e-29128
NC_010465:3465351:347561934756193476578960Yersinia pseudotuberculosis YPIII, complete genomeNAD-dependent epimerase/dehydratase4e-28125
NC_015761:2062345:207908920790892080084996Salmonella bongori NCTC 12419, complete genomeudp-N-acetylglucosamine 4-epimerase4e-24112
NC_012779:1286500:130023913002391301210972Edwardsiella ictaluri 93-146, complete genomeUDP-N-acetylglucosamine 4-epimerase9e-24111
NC_009778:1141716:114741411474141148409996Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-23110
NC_010831:2078329:208056920805692081561993Chlorobium phaeobacteroides BS1, complete genomeNAD-dependent epimerase/dehydratase1e-23110
NC_009337:715500:7519257519257529291005Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-23109
NC_015160:3556114:357573835757383576733996Odoribacter splanchnicus DSM 20712 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase6e-23108
NC_011059:1896593:190702619070261908012987Prosthecochloris aestuarii DSM 271, complete genomeNAD-dependent epimerase/dehydratase9e-23107
NC_010803:2067539:208461120846112085603993Chlorobium limicola DSM 245, complete genomeNAD-dependent epimerase/dehydratase9e-23107
NC_002655:2839600:285894328589432859938996Escherichia coli O157:H7 EDL933, complete genomeputative UDP-galactose 4-epimerase6e-22105
NC_010468:1775000:177908517790851780080996Escherichia coli ATCC 8739, complete genomeNAD-dependent epimerase/dehydratase6e-22105
NC_011748:2324495:234348923434892344484996Escherichia coli 55989, complete genomeUDP-N-acetylglucosamine 4-epimerase (UDP-GlcNAc 4-epimerase)6e-22105
NC_010498:1035406:104101610410161042011996Escherichia coli SMS-3-5, complete genomeUDP-N-acetylglucosamine 4-epimerase6e-22105
NC_011745:2302979:232202923220292323024996Escherichia coli ED1a chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase (UDP-GlcNAc 4-epimerase)6e-22105
CU928145:2324495:234348923434892344484996Escherichia coli 55989 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase (UDP-GlcNAc 4-epimerase)6e-22105
NC_002695:2769387:278872927887292789724996Escherichia coli O157:H7 str. Sakai, complete genomeputative UDP-galactose 4-epimerase6e-22105
CU928160:2155947:217411521741152175110996Escherichia coli IAI1 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase (UDP-GlcNAc 4-epimerase)6e-22105
NC_011353:2734222:275356427535642754559996Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase6e-22105
NC_011601:2211917:223361622336162234611996Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeUDP-galactose 4-epimerase6e-22105
NC_011741:2155947:217411521741152175110996Escherichia coli IAI1 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase (UDP-GlcNAc 4-epimerase)6e-22105
NC_013008:2733203:275254527525452753540996Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase6e-22105
NC_013941:2544569:256931625693162570311996Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase6e-22105
NC_010658:1090104:109591810959181096913996Shigella boydii CDC 3083-94, complete genomeUDP-N-acetylglucosamine 4-epimerase3e-21102
NC_015500:2636753:2642624264262426437061083Treponema brennaborense DSM 12168 chromosome, complete genomeUDP-N-acetylglucosamine 4-epimerase1e-20100
NS_000195:1785910:180807118080711809063993Candidatus Cloacamonas acidaminovoransputative UDP-N-acetylglucosamine 4-epimerase4e-1272.4
NC_002754:105256:137128137128138063936Sulfolobus solfataricus P2, complete genomeUDP-glucose 4-epimerase (galE-2)1e-1067.8
NC_007955:1664998:167703216770321677916885Methanococcoides burtonii DSM 6242, complete genomeNAD-dependent epimerase/dehydratase1e-0964.3
NC_014539:860402:882602882602883573972Burkholderia sp. CCGE1003 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase2e-0963.2
NC_014829:3964616:3969589396958939705961008Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeUDP-glucose 4-epimerase8e-0961.6
NC_017161:282500:300388300388301308921Hydrogenobacter thermophilus TK-6 chromosome, complete genomeADP-L-glycero-D-manno-heptose-6-epimerase1e-0860.8
NC_013799:282500:300398300398301318921Hydrogenobacter thermophilus TK-6, complete genomeADP-L-glycero-D-manno-heptose-6-epimerase1e-0860.8
NC_014394:3036758:304178930417893042733945Gallionella capsiferriformans ES-2 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-0859.7
NC_013939:1927424:1934113193411319351411029Deferribacter desulfuricans SSM1, complete genomeUDP-glucose 4-epimerase3e-0859.7
NC_012622:1859149:188114118811411882079939Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-0859.7
NC_013769:1908164:193015619301561931094939Sulfolobus islandicus L.D.8.5 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-0859.7
NC_012726:1792344:181510118151011816039939Sulfolobus islandicus M.16.4 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0859.3
NC_012623:733638:743636743636744574939Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0859.3
NC_012588:1788084:181084118108411811779939Sulfolobus islandicus M.14.25 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0859.3
NC_012589:1917421:194292219429221943860939Sulfolobus islandicus L.S.2.15, complete genomeNAD-dependent epimerase/dehydratase4e-0859.3
NC_015947:568124:579978579978580949972Burkholderia sp. JV3 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0858.9
NC_009464:2523092:254704325470432547963921Uncultured methanogenic archaeon RC-I, complete genomeputative UDP-glucose 4-epimerase1e-0757.8
NC_009767:433432:4588344588344598771044Roseiflexus castenholzii DSM 13941, complete genomeNAD-dependent epimerase/dehydratase2e-0757
NC_014219:3254268:327946932794693280317849Bacillus selenitireducens MLS10 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0757
NC_010084:2717443:272357127235712724536966Burkholderia multivorans ATCC 17616 chromosome 1, completeNAD-dependent epimerase/dehydratase2e-0756.6
NC_010804:782222:800237800237801202966Burkholderia multivorans ATCC 17616 chromosome 1, completeUDP-glucose 4-epimerase2e-0756.6
NC_007948:4558000:460866146086614609635975Polaromonas sp. JS666, complete genomeNAD-dependent epimerase/dehydratase4e-0755.8
NC_009483:3727490:374038737403873741370984Geobacter uraniireducens Rf4 chromosome, complete genomeUDP-glucose 4-epimerase4e-0755.8
NC_016751:1299738:1302798130279813038111014Marinitoga piezophila KA3 chromosome, complete genomeUDP-glucose-4-epimerase4e-0755.8
NC_015151:1063617:106687810668781067810933Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0755.8
NC_005363:1604337:163389316338931634762870Bdellovibrio bacteriovorus HD100, complete genomeUDP-N-acetyl-D-quinovosamine 4-epimerase4e-0755.8
NC_007503:919808:934570934570935511942Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein6e-0755.5
NC_020054:1002906:102565710256571026607951Fibrella aestuarina BUZ 2 drat genomeputative UDP-glucose epimerase ytcB6e-0755.5
NC_007951:769500:770344770344771300957Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative epimerase/dehydratase5e-0755.5
NC_014837:2803447:2820156282015628211691014Pantoea sp. At-9b chromosome, complete genomeUDP-glucose 4-epimerase7e-0755.1
NC_006177:2883476:291306929130692914034966Symbiobacterium thermophilum IAM 14863, complete genomeUDP-glucose 4-epimerase1e-0654.3
NC_017068:2827568:2830194283019428312131020Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative UDP-glucose 4-epimerase1e-0654.3
NC_014935:1389000:1403030140303014040611032Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeudp-galactose 4-epimerase1e-0654.3
NC_008639:2968000:300108130010813002040960Chlorobium phaeobacteroides DSM 266, complete genomeNAD-dependent epimerase/dehydratase1e-0654.3
NC_013158:1085937:108875110887511089698948Halorhabdus utahensis DSM 12940, complete genomeNAD-dependent epimerase/dehydratase1e-0653.9
NC_012491:5628000:5647320564732056483301011Brevibacillus brevis NBRC 100599, complete genomeputative dTDP-glucose 4,6-dehydratase2e-0653.5
NC_011000:3409126:341204434120443413021978Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative nucleotide sugar epimerase/dehydratase2e-0653.5
NC_014166:2498500:254579225457922546652861Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0653.5
NC_015682:379373:396910396910397893984Thermodesulfobacterium sp. OPB45 chromosome, complete genomeUDP-glucose 4-epimerase3e-0653.1
NC_016642:2440070:245290724529072453884978Pseudovibrio sp. FO-BEG1 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-0653.1
NC_015656:4879904:488568348856834886678996Frankia symbiont of Datisca glomerata chromosome, complete genomedTDP-glucose 4,6-dehydratase3e-0652.8
NC_013743:1281500:128741212874121288389978Haloterrigena turkmenica DSM 5511, complete genomeNAD-dependent epimerase/dehydratase4e-0652.8
NC_005364:1090472:1108435110843511094391005Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genomeUDP-glucose 4-epimerase4e-0652.4
NC_020210:3341976:3397059339705933980721014Geobacillus sp. GHH01, complete genomedTDP-glucose 4,6-dehydratase5e-0652.4
NC_009633:337706:340273340273341262990Alkaliphilus metalliredigens QYMF chromosome, complete genomeUDP-glucose 4-epimerase5e-0652
NC_014253:1197005:123630912363091237271963Methanohalobium evestigatum Z-7303 chromosome, complete genomeNAD-dependent epimerase/dehydratase6e-0652
NC_016771:4962795:4978365497836549793931029Bacillus cereus NC7401, complete genomeUDP-glucose 4-epimerase8e-0651.6
NC_011658:5007691:5026042502604250270701029Bacillus cereus AH187 chromosome, complete genomeUDP-glucose 4-epimerase8e-0651.6