Pre_GI: BLASTP Hits

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Query: NC_013410:1203937:1209422 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1209422, End: 1210144, Length: 723

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009615:4642500:466368346636834664414732Parabacteroides distasonis ATCC 8503 chromosome, complete genomeCDP-ribitol pyrophosphorylase2e-89328
NC_016077:998741:103420010342001034922723Acidaminococcus intestini RyC-MR95 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1e-73276
NC_021175:1973880:198258419825841983306723Streptococcus oligofermentans AS 1.3089, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-60230
NC_014833:3362500:336555233655523366304753Ruminococcus albus 7 chromosome, complete genome4-diphosphocytidyl-2C-methyl-D-erythritol synthase4e-58224
NC_017068:2436960:246019724601972460907711Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-44179
NC_015500:1923514:193508119350811935794714Treponema brennaborense DSM 12168 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-44177
NC_009615:4425500:443824844382484438958711Parabacteroides distasonis ATCC 8503 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase4e-39161
NC_009614:3748950:374895037489503749672723Bacteroides vulgatus ATCC 8482 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-35148
NC_015425:198315:216570216570217256687Clostridium botulinum BKT015925 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase8e-35147
NC_014033:1691822:170533917053391706103765Prevotella ruminicola 23 chromosome, complete genome2e-34145
NC_013740:842841:861129861129861851723Acidaminococcus fermentans DSM 20731, complete genome4-diphosphocytidyl-2C-methyl-D-erythritol synthase3e-34145
NC_012967:3012317:302468630246863025408723Escherichia coli B str. REL606 chromosome, complete genomePyrophosphorylase5e-31134
NC_008593:196257:211905211905212600696Clostridium novyi NT, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1e-30132
NC_015275:3594890:362638636263863627084699Clostridium lentocellum DSM 5427 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase8e-30130
NC_019970:336472:354725354725355411687Thermoanaerobacterium thermosaccharolyticum M0795, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-29128
NC_010674:222016:224898224898225572675Clostridium botulinum B str. Eklund 17B, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase7e-29127
NC_002570:126500:141464141464142150687Bacillus halodurans C-125, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-28126
NC_008262:2598920:264405026440502644727678Clostridium perfringens SM101, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-28125
NC_010723:223935:226817226817227491675Clostridium botulinum E3 str. Alaska E43, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase7e-28124
NC_012781:751757:761746761746762465720Eubacterium rectale ATCC 33656, complete genome4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family)7e-28124
NC_014479:3452484:347251334725133473226714Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative D-ribitol-5-phosphate cytidylyltransferase1e-27123
NC_016047:3632489:365041336504133651126714Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeribitol-5-phosphate cytidylyltransferase3e-27122
NC_012778:403962:410990410990411673684Eubacterium eligens ATCC 27750, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-27121
NC_020244:3490460:350827735082773508990714Bacillus subtilis XF-1, complete genomeputative ribitol-5-phosphate cytidylyltransferase1e-26120
NC_019896:536500:539338539338540051714Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeRibitol-5-phosphate cytidylyltransferase1e-26120
NC_009615:2184300:2193354219335421947241371Parabacteroides distasonis ATCC 8503 chromosome, complete genomepyrophosphorylase8e-27120
NC_002950:1511955:151916215191621519830669Porphyromonas gingivalis W83, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-26117
NC_004461:277291:321117321117321833717Staphylococcus epidermidis ATCC 12228, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase7e-26117
NC_009633:4563877:460549246054924606217726Alkaliphilus metalliredigens QYMF chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1e-25116
NC_014393:4482896:452540545254054526094690Clostridium cellulovorans 743B chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-25115
NC_014387:719245:726120726120726827708Butyrivibrio proteoclasticus B316 chromosome 1, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD13e-24112
NC_013165:1665014:167870216787021679427726Slackia heliotrinireducens DSM 20476, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase2e-24112
NC_010001:434803:444624444624445325702Clostridium phytofermentans ISDg, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-24110
NC_009953:1936463:1936463193646319380161554Salinispora arenicola CNS-205 chromosome, complete genome4-diphosphocytidyl-2C-methyl-D-erythritol synthase2e-23108
NC_014378:131810:153312153312154004693Acetohalobium arabaticum DSM 5501 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-23107
NC_013174:2013000:2013258201325820147091452Jonesia denitrificans DSM 20603, complete genome4-diphosphocytidyl-2C-methyl-D-erythritol synthase1e-22106
NC_015738:838715:859734859734860576843Eggerthella sp. YY7918, complete genomehypothetical protein3e-22105
NC_017208:64500:104924104924105562639Bacillus thuringiensis serovar chinensis CT-43 chromosome, complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-22105
NC_020291:166500:169121169121169798678Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD2e-22105
NC_014376:693820:701985701985702701717Clostridium saccharolyticum WM1 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-22104
NC_009615:1553556:157020415702041570893690Parabacteroides distasonis ATCC 8503 chromosome, complete genomenucleotidyltransferase1e-21103
NC_015913:1491393:152405315240531524736684Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-21102
NC_017294:1457262:149044314904431491126684Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-21102
NC_012438:50845:553225532255972651Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-21102
NC_009617:163466:167510167510168190681Clostridium beijerinckii NCIMB 8052 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-21102
NC_012778:263241:291669291669292343675Eubacterium eligens ATCC 27750, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase4e-21101
NC_013037:3994083:399408339940833994763681Dyadobacter fermentans DSM 18053, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-21101
NC_012673:1600242:160024216002421600922681Exiguobacterium sp. AT1b, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase9e-21100
NC_019903:421000:434832434832435518687Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-2099.4
NC_013890:53538:549195491955602684Dehalococcoides sp. GT chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-2098.2
NC_007356:51080:553805538056063684Dehalococcoides sp. CBDB1, complete genome2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase8e-2097.4
NC_009455:53000:547995479955482684Dehalococcoides sp. BAV1 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase8e-2097.4
NC_006138:273237:2770292770292783301302Desulfotalea psychrophila LSv54, complete genomesimilar to IspD/IspF bifunctional enzyme (Rhodobacter capsulatus)7e-2097.4
NC_002940:1065246:108703710870371087717681Haemophilus ducreyi 35000HP, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase9e-2097.1
NC_013165:1407000:142473714247371425702966Slackia heliotrinireducens DSM 20476, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase1e-1997.1
NC_010483:1441614:144814614481461448814669Thermotoga sp. RQ2, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-1892.8
NC_013165:1407000:142587714258771426605729Slackia heliotrinireducens DSM 20476, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase3e-1892.4
NC_011297:1296968:130152913015291302224696Dictyoglomus thermophilum H-6-12, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1892
NC_016751:1299738:131328413132841313979696Marinitoga piezophila KA3 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase4e-1891.7
NC_003454:63500:903149031491009696Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-1789.4
NC_006831:157895:159569159569160297729Ehrlichia ruminantium str. Gardel, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1789
NC_006832:160222:161900161900162628729Ehrlichia ruminantium str. Welgevonden, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1789
NC_013172:2934572:294340329434032944089687Brachybacterium faecium DSM 4810, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase6e-1787.8
NC_011899:86800:111039111039111728690Halothermothrix orenii H 168, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase4e-1684.7
NC_016148:951446:9724609724609736141155Thermovirga lienii DSM 17291 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1582
NC_016642:990058:998459998459998854396Pseudovibrio sp. FO-BEG1 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-1479.7
NC_009482:619467:618779618779619480702Synechococcus sp. RCC307 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase4e-1478.6
NC_015064:1268223:126981812698181270552735Acidobacterium sp. MP5ACTX9 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-1477.8
NC_012751:1538500:155637815563781557103726Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete4-diphosphocytidyl-2C-methyl-D-erythritol synthase9e-1477
NC_007519:1782067:1783902178390217851011200Desulfovibrio alaskensis G20 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-1374.3
NC_013165:1665014:167113616711361671822687Slackia heliotrinireducens DSM 20476, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase2e-1272.8
NC_015714:542679:5451615451615464081248Treponema paraluiscuniculi Cuniculi A chromosome, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1272.4
NC_010741:546573:5490565490565503031248Treponema pallidum subsp. pallidum SS14, complete genomehypothetical protein3e-1272.4
NC_016844:547069:5495525495525507991248Treponema pallidum subsp. pallidum DAL-1 chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1272.4
NC_017268:546376:5488595488595501061248Treponema pallidum subsp. pallidum str. Chicago chromosome,bifunctional enzyme IspD/ispF3e-1272.4
NC_021508:546592:5490755490755503221248Treponema pallidum subsp. pallidum SS14, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1272.4
NC_000919:545141:5476725476725488711200Treponema pallidum subsp. pallidum str. Nichols, complete genomehypothetical protein3e-1272.4
NC_016842:546661:5491445491445503911248Treponema pallidum subsp. pertenue str. SamoaD chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-1272.4
NC_016843:547149:5496325496325508791248Treponema pallidum subsp. pertenue str. Gauthier chromosome,bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-1272.4
NC_016848:547115:5495985495985508451248Treponema pallidum subsp. pertenue str. CDC2 chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-1272.4
NC_005085:1269787:132290313229031323580678Chromobacterium violaceum ATCC 12472, complete genome4-diphosphocytidyl-2C-methyl-D-erythritol synthase4e-1271.6
NC_010382:4479464:448955244895524490247696Lysinibacillus sphaericus C3-41, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-1271.2
NC_013946:415028:439569439569440201633Meiothermus ruber DSM 1279 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1168.9
NC_016632:285408:297985297985298701717Serratia symbiotica str. 'Cinara cedri' chromosome, complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1168.9
NC_006624:1494424:150749115074911508180690Thermococcus kodakarensis KOD1, complete genomecytidylyltransferase1e-1066.6
NC_010468:1029471:105139410513941052104711Escherichia coli ATCC 8739, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1e-1066.6
NC_014109:27500:339703397034698729Candidatus Riesia pediculicola USDA chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-1065.9
NC_004344:589375:614839614839615528690Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein8e-1064.3
NC_016633:1353458:135732013573201358132813Sphaerochaeta pleomorpha str. Grapes chromosome, complete genome4-diphosphocytidyl-2-methyl-D-erythritol synthase9e-1063.9
NC_014962:4538122:454252945425294543311783Isosphaera pallida ATCC 43644 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1e-0963.5
NC_010995:2547164:255803825580382558808771Cellvibrio japonicus Ueda107, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-0962.4
NC_008601:631504:654135654135654824690Francisella tularensis subsp. novicida U112, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase6e-0961.2
NC_015696:1749863:175113017511301751822693Francisella sp. TX077308 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase7e-0960.8
NC_016445:2938887:297110229711022971800699Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase9e-0960.5
NC_006570:707280:729286729286729975690Francisella tularensis subsp. tularensis Schu 4, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase9e-0960.5
NC_008245:707984:729238729238729927690Francisella tularensis subsp. tularensis FSC 198, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase9e-0960.5
NC_016043:471719:492293492293493006714Taylorella asinigenitalis MCE3 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-0859.7
NC_007984:221030:224342224342225067726Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-0859.7
NC_011295:779569:7849447849447860321089Coprothermobacter proteolyticus DSM 5265, complete genomebifunctional enzyme IspD/ispF4e-0858.5
NC_010336:213148:231933231933232625693Francisella philomiragia subsp. philomiragia ATCC 25017, complete2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2e-0755.8
NC_014562:2563466:260795326079532608669717Pantoea vagans C9-1 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase3e-0755.5
NC_016937:707279:729333729333729974642Francisella tularensis subsp. tularensis TI0902 chromosome,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-0754.7
NC_016933:783938:805240805240805881642Francisella tularensis TIGB03 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase5e-0754.7