Pre_GI: BLASTP Hits

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Query: NC_013316:891782:894072 Clostridium difficile R20291, complete genome

Start: 894072, End: 895076, Length: 1005

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:905347:9062349062349072381005Clostridium difficile BI1, complete genomeLacI family transcriptional regulator0659
NC_013315:895500:8964578964578974611005Clostridium difficile CD196 chromosome, complete genomeLacI family transcriptional regulator0659
NC_009089:965959:9668459668459678491005Clostridium difficile 630, complete genomeLacI-family transcriptional regulator0659
NC_019897:1412496:1426850142685014278811032Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator2e-25117
NC_007644:1293701:1306526130652613075691044Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LacI family5e-1892
NC_014041:3197192:3197192319719231982111020Zunongwangia profunda SM-A87 chromosome, complete genomeTranscriptional regulator3e-1583.2
NC_015588:2037726:2046464204646420474741011Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, LacI family3e-1582.8
NC_016023:1874827:190046819004681901463996Bacillus coagulans 36D1 chromosome, complete genomeLacI family transcriptional regulator6e-1581.6
NC_009342:1570000:1575439157543915764791041Corynebacterium glutamicum R chromosome, complete genomehypothetical protein4e-1479.3
NC_013716:357928:3816913816913827221032Citrobacter rodentium ICC168, complete genomeLacI-family transcriptional regulator4e-1479
NC_011653:1574415:158207715820771583075999Thermosipho africanus TCF52B, complete genometranscriptional regulator, LacI family4e-1479
NC_013530:423540:4303174303174313511035Xylanimonas cellulosilytica DSM 15894, complete genometranscriptional regulator, LacI family1e-1377.8
NC_016613:2759908:276395127639512764949999Vibrio sp. EJY3 chromosome 1, complete sequencetranscriptional repressor RbsR1e-1377.4
NC_016012:236012:236012236012237010999Candidatus Arthromitus sp. SFB-rat-Yit, complete genomealanine racemase1e-1377.4
NC_014656:1365673:1385700138570013867221023Bifidobacterium longum subsp. longum BBMN68 chromosome, completelaci-type transcriptional regulator2e-1377
NC_013406:3650300:365483336548333655825993Paenibacillus sp. Y412MC10 chromosome, complete genomeLacI family transcriptional regulator2e-1377
NC_017138:2293576:2293576229357622946101035Bacillus megaterium WSH-002 chromosome, complete genomeHTH-type transcriptional regulator msmR2e-1376.6
NC_012914:3315947:3331997333199733330071011Paenibacillus sp. JDR-2, complete genometranscriptional regulator, LacI family3e-1376.3
NC_016593:956839:964635964635965633999Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeHTH-type transcriptional regulator ganR4e-1375.9
NC_014323:292958:2929582929582939741017Herbaspirillum seropedicae SmR1 chromosome, complete genomeLacI family transcription regulator protein9e-1374.7
NC_020291:6310000:632370663237066324683978Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, LacI family1e-1274.3
NC_014328:180482:190314190314191312999Clostridium ljungdahlii ATCC 49587 chromosome, complete genometranscriptional regulator1e-1274.3
AP010958:3853082:389709238970923898075984Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional repressor EbgR2e-1170.5
NC_013353:3853082:389709238970923898075984Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional repressor EbgR2e-1170.5
NC_010067:1507823:1507823150782315088481026Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1170.5
NC_015947:1142206:1165782116578211667891008Burkholderia sp. JV3 chromosome, complete genomeLacI family transcriptional regulator3e-1169.7
NC_014650:2143033:2155969215596921569701002Geobacillus sp. Y4.1MC1 chromosome, complete genomeLacI family transcriptional regulator3e-1169.3
NC_015732:773143:8056588056588066771020Spirochaeta caldaria DSM 7334 chromosome, complete genomeLacI family transcriptional regulator4e-1169.3
NC_021066:3028421:3043636304363630446851050Raoultella ornithinolytica B6, complete genomehypothetical protein4e-1169.3
NC_003197:1471349:1507920150792015089451026Salmonella typhimurium LT2, complete genomepur regulon transcriptional repressor5e-1168.9
NC_011094:1435347:1471834147183414728591026Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding transcriptional repressor PurR5e-1168.9
NC_016856:1481325:1517896151789615189211026Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA-binding transcriptional repressor PurR5e-1168.9
NC_016860:1469066:1505607150560715066321026Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding transcriptional repressor PurR5e-1168.9
NC_016863:1429516:1466087146608714671121026Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA-binding transcriptional repressor PurR5e-1168.9
NC_011080:1470794:1507360150736015083851026Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional repressor PurR6e-1168.6
NC_016613:2759908:276559427655942766586993Vibrio sp. EJY3 chromosome 1, complete sequenceDNA-binding transcriptional repressor EbgR1e-1067.8
NC_014721:135982:1376111376111386241014Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, laci family1e-1067.8
NC_015389:1610756:1616273161627316172951023Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, LacI family1e-1067.8
NC_012724:1914740:1938108193810819391541047Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, LacI family protein1e-1067.8
NC_015690:3941113:3998082399808239991341053Paenibacillus mucilaginosus KNP414 chromosome, complete genomeLacI family transcriptional regulator1e-1067.8
NC_016935:1365463:1417532141753214185841053Paenibacillus mucilaginosus 3016 chromosome, complete genomeLacI family transcriptional regulator1e-1067.8
NC_013510:5175649:5178251517825151793241074Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, LacI family1e-1067.8
NC_015966:1145974:1150796115079611518451050Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeLacI family transcriptional regulator1e-1067.4
NC_014392:2350577:2368548236854823695701023Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, LacI family1e-1067.4
NC_009328:2083386:2135008213500821360121005Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator2e-1067
NC_009617:263060:2659912659912669921002Clostridium beijerinckii NCIMB 8052 chromosome, complete genomealanine racemase3e-1066.2
NC_014657:2283176:2300468230046823014901023Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, laci family3e-1066.2
NC_013282:2026083:2076446207644620774711026Cronobacter turicensis, complete genomeHTH-type transcriptional repressor purR5e-1065.9
NC_016582:10227196:1024229110242291102433191029Streptomyces bingchenggensis BCW-1 chromosome, complete genomeLacI family transcriptional regulator4e-1065.9
NC_014652:325109:3285693285693295911023Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, laci family4e-1065.9
NC_011071:1178423:1180589118058911817191131Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, LacI family5e-1065.5
NC_015519:686027:7012867012867023081023Tepidanaerobacter sp. Re1 chromosome, complete genomeLacI family transcriptional regulator8e-1065.1
NC_017098:1542284:1587184158718415884251242Spirochaeta africana DSM 8902 chromosome, complete genometranscriptional regulator8e-1064.7
NC_020291:270234:2926162926162936171002Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeHTH-type transcriptional regulator MalR8e-1064.7
NC_010572:1293786:1293786129378612948021017Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative LacI-family transcriptional regulator9e-1064.7
NC_021177:7159654:7175280717528071762961017Streptomyces fulvissimus DSM 40593, complete genomeLacI-family transcriptional regulator9e-1064.7
NC_012034:2676943:2711258271125827122801023Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, LacI family9e-1064.7
NC_020908:823589:8297728297728308301059Octadecabacter arcticus 238, complete genomeLacI family transcriptional regulator1e-0964.3
NC_014720:383587:3870573870573880791023Caldicellulosiruptor kronotskyensis 2002 chromosome, completetranscriptional regulator, laci family1e-0964.3
NC_015949:2327500:2344130234413023451431014Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeLacI family transcriptional regulator1e-0964.3
NC_009437:475817:4792774792774802991023Caldicellulosiruptor saccharolyticus DSM 8903, complete genomealanine racemase2e-0963.9
NC_014169:1909482:1923929192392919249721044Bifidobacterium longum subsp. longum JDM301 chromosome, completeperiplasmic-binding protein/LacI transcriptional regulator2e-0963.9
NC_003155:6444500:6448019644801964490831065Streptomyces avermitilis MA-4680, complete genomeLacI-family transcriptional regulator, ribose operon repressor3e-0963.2
NC_014960:1950648:1955101195510119561171017Anaerolinea thermophila UNI-1, complete genomeLacI family transcriptional regulator3e-0963.2
NC_012917:833721:8628718628718639021032Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, LacI family4e-0962.8
NC_008391:2253188:227498622749862275978993Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, LacI family3e-0962.8
NC_013093:2895511:2911112291111229121521041Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LacI family3e-0962.8
NC_012815:1862373:1880600188060018816491050Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeLacI-type transcriptional regulator6e-0962
NC_016612:361417:3653263653263663361011Klebsiella oxytoca KCTC 1686 chromosome, complete genomesugar binding transcriptional regulator, LacI family protein9e-0961.2
NC_009078:2718741:2762372276237227634301059Burkholderia pseudomallei 1106a chromosome II, complete sequencetranscriptional regulator, lacI family1e-0861.2
NC_011899:1926000:1946127194612719472871161Halothermothrix orenii H 168, complete genometranscriptional regulator, LacI family1e-0861.2
NC_014306:642152:6627736627736638101038Erwinia billingiae Eb661, complete genomeTranscriptional regulator1e-0861.2
NC_007435:1446916:1490546149054614917001155Burkholderia pseudomallei 1710b chromosome II, complete sequenceLacI family regulatory protein1e-0860.8
NC_016628:537137:5591255591255601291005Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscription regulator protein1e-0860.8
NC_013525:1221604:1221604122160412226891086Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genometranscriptional regulator, LacI family2e-0860.5
NC_007613:4217557:425515342551534256118966Shigella boydii Sb227, complete genometreR2e-0860.5
NC_011886:404661:4260294260294270811053Arthrobacter chlorophenolicus A6, complete genometranscriptional regulator, LacI family1e-0860.5
NC_006510:1921541:1934130193413019351461017Geobacillus kaustophilus HTA426, complete genometranscriptional regulator involved in degradation (LacI family)2e-0860.1
NC_015947:1142206:1146835114683511478661032Burkholderia sp. JV3 chromosome, complete genomeLacI family transcriptional regulator2e-0860.1
NC_008618:1456000:1476252147625214773311080Bifidobacterium adolescentis ATCC 15703, complete genomeLacI-type transcriptional regulator3e-0859.7
NC_014829:1154520:1171206117120611742563051Bacillus cellulosilyticus DSM 2522 chromosome, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)3e-0859.3
NC_015588:475723:4829204829204839571038Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, LacI family3e-0859.3
NC_015589:1468774:1488011148801114890271017Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator5e-0858.9
NC_010498:4821519:482151948215194822466948Escherichia coli SMS-3-5, complete genometrehalose operon repressor5e-0858.9
NC_011742:4795733:479573347957334796680948Escherichia coli S88 chromosome, complete genometrehalose repressor5e-0858.9
NC_012947:3947238:396358539635853964532948Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetrehalose repressor5e-0858.9
NC_012967:4449576:444957644495764450523948Escherichia coli B str. REL606 chromosome, complete genometrehalose repressor5e-0858.9
NC_009328:2808897:283152328315232832518996Geobacillus thermodenitrificans NG80-2 chromosome, complete genomecatabolite control protein6e-0858.5
NC_000913:4462782:446432244643224465269948Escherichia coli K12, complete genometrehalose repressor7e-0858.5
NC_010473:4564590:456613045661304567077948Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional repressor7e-0858.5
NC_018720:1878201:1892660189266018936641005Bifidobacterium asteroides PRL2011 chromosome, complete genometranscriptional regulator, LacI family1e-0757.8
NC_014829:3741843:375097337509733751938966Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional regulator, LacI family1e-0757.8
NC_007677:3505487:350873735087373509732996Salinibacter ruber DSM 13855, complete genomeribose operon repressor2e-0757.4
NC_014032:3573920:357657935765793577574996Salinibacter ruber M8 chromosome, complete genomeribose operon repressor2e-0757.4
NC_020064:1854589:1868905186890518699451041Serratia marcescens FGI94, complete genometranscriptional regulator2e-0757.4
NC_010320:143109:1616571616571626671011Thermoanaerobacter sp. X514 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0757
NC_014538:187747:2015222015222025321011Thermoanaerobacter sp. X513 chromosome, complete genomeLacI family transcriptional regulator2e-0757
NC_015577:786155:7910717910717920931023Treponema azotonutricium ZAS-9 chromosome, complete genomeregulatory protein LacI2e-0757
NC_013521:302574:3035963035963046001005Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator3e-0756.6
NC_014364:1899983:191734819173481918346999Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, LacI family2e-0756.6
NC_014650:1763308:1782550178255017835631014Geobacillus sp. Y4.1MC1 chromosome, complete genomeLacI family transcriptional regulator2e-0756.6
NC_010516:127000:131442131442132440999Clostridium botulinum B1 str. Okra, complete genometranscriptional regulator, LacI family2e-0756.6
NC_014829:1154520:1174749117474911777993051Bacillus cellulosilyticus DSM 2522 chromosome, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)3e-0756.2
NC_010674:311378:324295324295325293999Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulator, LacI family3e-0756.2
NC_004337:3590323:394771739477173948700984Shigella flexneri 2a str. 301, complete genomeregulator for rbs operon3e-0756.2
NC_011750:4543135:454313545431354544127993Escherichia coli IAI39 chromosome, complete genometranscriptional repressor RbsR3e-0756.2
NC_009699:122000:126464126464127462999Clostridium botulinum F str. Langeland chromosome, complete genomeLacI family transcriptional regulator3e-0756.2
NC_017297:122383:126729126729127727999Clostridium botulinum F str. 230613 chromosome, complete genomeLacI family transcriptional regulator3e-0756.2
NC_012815:1757992:176454217645421765519978Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeribose operon repressor RbsR3e-0756.2
NC_012814:1757753:176477017647701765747978Bifidobacterium animalis subsp. lactis Bl-04, complete genomeribose operon repressor RbsR3e-0756.2
NC_006322:1119471:1144778114477811458211044Bacillus licheniformis ATCC 14580, complete genomeMsmR5e-0755.8
NC_006270:1119000:1143930114393011449671038Bacillus licheniformis ATCC 14580, complete genometranscriptional regulator MsmR5e-0755.8
NC_017167:1088713:1114180111418011151931014Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1purine operon repressor, PurR4e-0755.8
NC_011886:404661:4068444068444078481005Arthrobacter chlorophenolicus A6, complete genometranscriptional regulator, LacI family6e-0755.5
NC_012658:125500:129141129141130139999Clostridium botulinum Ba4 str. 657 chromosome, complete genomeLacI family transcriptional regulator8e-0755.1
NC_012563:122000:125597125597126595999Clostridium botulinum A2 str. Kyoto, complete genometranscriptional regulator, LacI family7e-0755.1
NC_009495:128000:131661131661132659999Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeLacI family transcriptional regulator7e-0755.1
NC_009697:120117:124464124464125462999Clostridium botulinum A str. ATCC 19397 chromosome, completeLacI family transcriptional regulator7e-0755.1
NC_009698:120119:124466124466125464999Clostridium botulinum A str. Hall chromosome, complete genomeLacI family transcriptional regulator7e-0755.1
NC_013714:2294342:2297105229710522981871083Bifidobacterium dentium Bd1, complete genomeTranscriptional regulator, LacI family7e-0755.1
NC_010520:121077:125424125424126422999Clostridium botulinum A3 str. Loch Maree, complete genometranscriptional regulator, LacI family7e-0755.1
UCMB5137:2418403:2442677244267724436811005Bacillus atrophaeus UCMB-5137Lacl family transcriptional regulator9e-0754.7
NC_015161:1556766:1560467156046715614891023Deinococcus proteolyticus MRP chromosome, complete genometranscriptional regulator, LacI family1e-0654.7
NC_019978:2506472:2508740250874025097441005Halobacteroides halobius DSM 5150, complete genometranscriptional regulator1e-0654.7
NC_015703:6295500:6309376630937663104041029Runella slithyformis DSM 19594 chromosome, complete genomeLacI family transcriptional regulator1e-0654.3
NC_019673:2733327:2743031274303127440621032Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, CelR family1e-0654.3
NC_007644:626992:6531266531266541451020Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LacI family2e-0653.9
NC_013517:3846747:3857306385730638583281023Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, LacI family2e-0653.9
NC_012914:4238142:4250925425092542519441020Paenibacillus sp. JDR-2, complete genometranscriptional regulator, LacI family3e-0653.1
NC_008262:2824503:2840824284082428418701047Clostridium perfringens SM101, complete genomeTranscriptional regulator5e-0652.4
NC_015425:2024154:203997620399762040971996Clostridium botulinum BKT015925 chromosome, complete genomeCatabolite control protein A5e-0652.4
NC_007103:291000:304336304336305334999Bacillus cereus E33L plasmid pE33L466, complete sequencedegradation activator5e-0652