Pre_GI: BLASTP Hits

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Query: NC_013316:2033906:2052640 Clostridium difficile R20291, complete genome

Start: 2052640, End: 2053092, Length: 453

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014828:541874:555163555163555594432Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein2e-25114
NC_015500:1204501:122060612206061221025420Treponema brennaborense DSM 12168 chromosome, complete genomeSigma-70 region 4 type 21e-21102
NC_013316:2033906:205306720530672053564498Clostridium difficile R20291, complete genomerna polymerase, sigma-24 subunit, ecf subfamily2e-1994.4
NC_018867:10238:174111741117833423Dehalobacter sp. CF chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein2e-1684.7
NC_016627:4159406:418028941802894180711423Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit6e-1682.8
NC_014828:1987487:201151020115102011935426Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein5e-1580.1
NC_016048:2907702:297208829720882972498411Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein5e-1580.1
NC_018867:10238:636876368764292606Dehalobacter sp. CF chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein6e-1579.7
NC_014828:2038692:207118020711802071605426Ethanoligenens harbinense YUAN-3 chromosome, complete genomeSigma-70 region 4 type 21e-1478.6
NC_015977:442493:444817444817445230414Roseburia hominis A2-183 chromosome, complete genomeSigma-70 region 4 type 26e-1476.3
NC_014828:2038692:208689020868902087315426Ethanoligenens harbinense YUAN-3 chromosome, complete genomeSigma-70 region 4 type 28e-1372.8
NC_016048:3063888:309227030922703092680411Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein5e-0650.1