Query: NC_013315:1187986 Clostridium difficile CD196 chromosome, complete genome
Start: 1187986, End: 1210599, Length: 22614
Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria
General Information: Isolated from a single patient with pseudomembranous colitis in a Paris hospital in 1985. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_013316:1186156 | 1186156 | 1205137 | 18982 | Clostridium difficile R20291, complete genome | 0 | 18880 | BLASTN svg | BLASTP svg |
| NC_009089:1329826 | 1329826 | 1352153 | 22328 | Clostridium difficile 630, complete genome | 0 | 18460 | BLASTN svg | BLASTP svg |
| NC_012563:3416509* | 3416509 | 3435247 | 18739 | Clostridium botulinum A2 str. Kyoto, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
| NC_010516:3234791* | 3234791 | 3258328 | 23538 | Clostridium botulinum B1 str. Okra, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
| NC_003030:1375764 | 1375764 | 1397794 | 22031 | Clostridium acetobutylicum ATCC 824, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_015687:1377367 | 1377367 | 1400277 | 22911 | Clostridium acetobutylicum DSM 1731 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_016012:396910* | 396910 | 414716 | 17807 | Candidatus Arthromitus sp. SFB-rat-Yit, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_021182:2160580* | 2160580 | 2185599 | 25020 | Clostridium pasteurianum BC1, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_003454:63500* | 63500 | 107268 | 43769 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_014328:794000* | 794000 | 816149 | 22150 | Clostridium ljungdahlii ATCC 49587 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |