Pre_GI: BLASTP Hits

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Query: NC_013315:4015119:4044928 Clostridium difficile CD196 chromosome, complete genome

Start: 4044928, End: 4045740, Length: 813

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from a single patient with pseudomembranous colitis in a Paris hospital in 1985. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:4023139:405294840529484053760813Clostridium difficile BI1, complete genomeMerR family transcriptional regulator7e-157552
NC_013316:4095905:412571441257144126526813Clostridium difficile R20291, complete genomeMerR-family transcriptional regulator7e-157552
NC_016584:2244966:227049422704942271303810Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator6e-62237
NC_014624:2569604:258018525801852580961777Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein4e-39161
NC_016048:4163225:419321241932124194036825Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator2e-32139
NC_011898:3159411:317709831770983177919822Clostridium cellulolyticum H10, complete genometranscriptional regulator, MerR family3e-29128
NC_014221:792363:806617806617807441825Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, MerR family7e-28124
NC_016584:4325964:432874343287434329555813Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-25116
NC_016048:797762:800661800661801476816Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator3e-24112
NC_009077:5286275:528973352897335290563831Mycobacterium sp. JLS, complete genomeputative transcriptional regulator, MerR family8e-22104
NC_013757:2630000:263326726332672634079813Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, MerR family8e-1994.4
NC_013406:3672857:371383337138333714651819Paenibacillus sp. Y412MC10 chromosome, complete genomeMerR family transcriptional regulator6e-1581.3
NC_009089:4177117:418251841825184183375858Clostridium difficile 630, complete genomeMerR-family transcriptional regulator9e-1580.9
NC_017179:3984000:398807339880733988930858Clostridium difficile BI1, complete genomeMerR family transcriptional regulator9e-1477.4
NC_013315:3978495:398005339800533980910858Clostridium difficile CD196 chromosome, complete genomeMerR family transcriptional regulator9e-1477.4
NC_020418:14965:164191641917276858Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, MerR family1e-1377.4
NC_013595:196493:218127218127218915789Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, MerR family1e-1273.9
UCMB5137:3660165:367585036758503676662813Bacillus atrophaeus UCMB-5137putative transcriptional regulator of efflux transporter2e-1170.1
NC_009698:2171151:219123921912392192069831Clostridium botulinum A str. Hall chromosome, complete genomeMerR family transcriptional regulator2e-1169.7
NC_009697:2173000:219102021910202191850831Clostridium botulinum A str. ATCC 19397 chromosome, completeMerR family transcriptional regulator2e-1169.7
NC_009495:2244774:226237822623782263208831Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeMerR family transcriptional regulator2e-1169.7
UCMB5137:2054735:207424220742422075075834Bacillus atrophaeus UCMB-5137BmrR protein3e-1168.9
NC_011830:3025437:303125230312523032007756Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, MerR family4e-1168.9
NC_007907:1940000:194411719441171944872756Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-1168.9
NC_004557:1553000:156846115684611569303843Clostridium tetani E88, complete genometranscriptional regulatory protein9e-1167.4
NC_009699:1122000:114293611429361143757822Clostridium botulinum F str. Langeland chromosome, complete genomeMerR family transcriptional regulator3e-1065.9
NC_016047:2658000:268882426888242689669846Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeBmrR protein3e-1065.9
NC_017195:2498113:254309625430962543944849Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeBmrR9e-1064.3
NC_009338:955195:975815975815976687873Mycobacterium gilvum PYR-GCK chromosome, complete genomeMerR family transcriptional regulator1e-0964.3
NC_006322:2658587:267322126732212674066846Bacillus licheniformis ATCC 14580, complete genomeBmrR1e-0964.3
NC_006270:2657726:267236126723612673206846Bacillus licheniformis ATCC 14580, complete genometranscriptional regulator1e-0964.3
NC_016627:2593242:259685025968502597614765Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator2e-0963.5
NC_016048:3063888:309992430999243100652729Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator2e-0963.2
NC_010723:1379256:138162413816241382097474Clostridium botulinum E3 str. Alaska E43, complete genomeMerR-family transcriptional regulator2e-0963.2
NC_016627:3158353:317921431792143180050837Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator2e-0963.2
NC_016633:14000:202342023420998765Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative transcriptional regulator2e-0963.2
NC_016582:4934854:494056949405694941468900Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator, MerR family protein4e-0962
NC_014633:655693:656410656410657219810Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencetranscriptional regulator, MerR family8e-0961.2
NC_009328:448224:497406497406498158753Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional activator TipA2e-0859.3
NC_010674:1496500:149822114982211499057837Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulatory protein3e-0859.3
NC_004193:375416:451725451725452558834Oceanobacillus iheyensis HTE831, complete genometranscriptional activator of multidrug-efflux transporter5e-0858.5
NC_004193:375416:406314406314407078765Oceanobacillus iheyensis HTE831, complete genometranscriptional activator of multidrug-efflux transporters7e-0857.8
NC_013159:3858425:387858238785823879541960Saccharomonospora viridis DSM 43017, complete genomepredicted transcriptional regulator9e-0857.8
NC_014550:7560:273602736027812453Arthrobacter arilaitensis Re117, complete genome1e-0757
NC_015660:3518931:355621435562143556987774Geobacillus thermoglucosidasius C56-YS93 chromosome, completeMerR family transcriptional regulator2e-0756.6
NC_016935:2347691:242275624227562423229474Paenibacillus mucilaginosus 3016 chromosome, complete genomeMerR family transcriptional regulator2e-0756.2
NC_015690:1818333:189300718930071893480474Paenibacillus mucilaginosus KNP414 chromosome, complete genomeMerR family transcriptional regulator2e-0756.2
NC_011146:2304475:231282423128242313399576Geobacter bemidjiensis Bem, complete genometranscriptional regulator, MerR family3e-0755.8
NC_015977:2920500:293618029361802936914735Roseburia hominis A2-183 chromosome, complete genomehypothetical protein4e-0755.5
NC_020291:4357425:4357425435742543586241200Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomemethylase involved in ubiquinone/menaquinone biosynthesis5e-0755.1
NC_003909:4614789:463159846315984632368771Bacillus cereus ATCC 10987, complete genometranscriptional regulator, MerR family8e-0754.7
NC_011274:376970:398848398848399312465Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator7e-0754.7
NC_011083:403022:447987447987448451465Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Cu(I)-responsive transcriptional regulator6e-0754.7
NC_011080:383441:405320405320405784465Salmonella enterica subsp. enterica serovar Newport str. SL254,Cu(I)-responsive transcriptional regulator6e-0754.7
NC_011149:361765:383657383657384121465Salmonella enterica subsp. enterica serovar Agona str. SL483,Cu(I)-responsive transcriptional regulator6e-0754.7
NC_012125:373630:395509395509395973465Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator6e-0754.7
NC_016771:4569941:458727545872754588045771Bacillus cereus NC7401, complete genomeMerR family transcriptional regulator9e-0754.3
NC_011658:4616933:463351046335104634280771Bacillus cereus AH187 chromosome, complete genomeMerR family transcriptional regulator9e-0754.3
NC_010001:1745089:175040017504001751233834Clostridium phytofermentans ISDg, complete genometranscriptional regulator, MerR family1e-0653.9
NC_016047:2658000:268162426816242682445822Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemultidrug-efflux transporter 2 regulator1e-0653.9
NC_011969:4655602:465621846562184656949732Bacillus cereus Q1 chromosome, complete genometranscriptional activator2e-0653.1
NC_000964:2702376:271526127152612716082822Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator3e-0652.4
NC_019896:1483073:150976115097611510582822Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug-efflux transporter 2 regulator6e-0651.6
NC_020244:2509000:253068625306862531507822Bacillus subtilis XF-1, complete genometranscriptional regulator6e-0651.6
NC_014976:684000:699900699900700721822Bacillus subtilis BSn5 chromosome, complete genometranscriptional regulator6e-0651.6
NC_020164:701151:727371727371728090720Staphylococcus warneri SG1, complete genometranscriptional regulator, MerR family protein7e-0651.2
NC_019896:17873:404364043641140705Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscriptional regulator8e-0651.2
NC_014624:1369642:139722513972251398094870Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator9e-0650.8
NC_017195:2498113:252272125227212523542822Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completemultidrug-efflux transporter 2 regulator9e-0650.8