Pre_GI: BLASTP Hits

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Query: NC_013199:845000:862188 Lactobacillus rhamnosus Lc 705, complete genome

Start: 862188, End: 862718, Length: 531

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013198:1095591:112205511220551122597543Lactobacillus rhamnosus GG, complete genomeprophage protein, HNH endodeoxyribonuclease family (HNH homing endonuclease I-HmuI)1e-55215
NC_008530:646207:656615656615657346732Lactobacillus gasseri ATCC 33323, complete genomeHoming nuclease of HNH family with NUMOD4 and IENR domains3e-27120
NC_014724:1101950:111980611198061120336531Lactobacillus amylovorus GRL 1112 chromosome, complete genomehoming nuclease1e-23109
NC_016052:1839763:185041518504151850951537Tetragenococcus halophilus NBRC 12172, complete genomehypothetical protein6e-23106
NC_012121:474144:481699481699482250552Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative HNH-family endonuclease, phage associated2e-1995.1
NC_008571:2553849:256822325682232569161939Gramella forsetii KT0803, complete genomeHNH endonuclease family protein2e-1789
NC_009782:920272:927128927128927679552Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein2e-1788.2
NC_002758:918827:925683925683926234552Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-1788.2
NC_011660:2924397:293911529391152939657543Listeria monocytogenes HCC23 chromosome, complete genomeHNH endonuclease family protein9e-1682.8
NC_015590:1425628:143724414372441437780537Sinorhizobium meliloti AK83 chromosome 1, complete sequenceNUMOD4 domain-containing protein1e-1582.8
NC_014973:3452100:346695034669503467465516Geobacter sp. M18 chromosome, complete genomeHNH endonuclease2e-1582
NC_013364:2612822:262864126286412629174534Escherichia coli O111:H- str. 11128, complete genomeputative endodeoxyribonuclease2e-1581.6
NC_009256:1253384:126519412651941265736543Burkholderia vietnamiensis G4 chromosome 1, complete sequenceNUMOD4 domain-containing protein6e-1580.1
NC_015975:1056731:107802010780201078571552Lactobacillus ruminis ATCC 27782 chromosome, complete genomeputative DNA endonuclease2e-1478.6
NC_004663:2509433:254343125434312544399969Bacteroides thetaiotaomicron VPI-5482, complete genomeendonuclease5e-1373.9
NC_012918:1697860:170773517077351708259525Geobacter sp. M21 chromosome, complete genomeHNH endonuclease3e-1271.6
NC_017190:2130651:215684221568422157525684Bacillus amyloliquefaciens LL3 chromosome, complete genomeHNH endonuclease family protein5e-1270.5
NC_012984:1027898:103422310342231034789567Lactobacillus plantarum JDM1, complete genomehypothetical protein3e-1167.8
NC_015975:923812:941907941907942476570Lactobacillus ruminis ATCC 27782 chromosome, complete genomeputative HNH endonuclease, phage-like protein1e-0962.8
NC_010612:4837346:485727948572794857779501Mycobacterium marinum M, complete genomehypothetical protein2e-0961.6
NC_009633:4097536:410602841060284106537510Alkaliphilus metalliredigens QYMF chromosome, complete genomeNUMOD4 domain-containing protein3e-0961.6
NC_012891:1573435:158158015815801582140561Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,putative endodeoxyribonuclease1e-0859.3
NC_007517:2564361:258694825869482587427480Geobacter metallireducens GS-15, complete genomeHNH endonuclease3e-0858.2
NC_013008:3231414:323212932321293232731603Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeendonuclease6e-0857
NC_010612:4837346:484960348496034850187585Mycobacterium marinum M, complete genomehypothetical protein9e-0753.1
NC_011369:4395773:441633944163394417010672Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completeNUMOD4 domain-containing protein1e-0652.8
NC_014973:1941500:195500019550001955380381Geobacter sp. M18 chromosome, complete genomeNUMOD4 domain-containing protein1e-0652.8
NC_012490:2660089:267878926787892679613825Rhodococcus erythropolis PR4, complete genomehypothetical protein3e-0651.6
NC_011898:3367457:341006734100673410594528Clostridium cellulolyticum H10, complete genomeHNH endonuclease3e-0651.2
NC_010805:1642978:166315216631521663691540Burkholderia multivorans ATCC 17616 chromosome 2, completebacteriophage endonuclease6e-0650.4
NC_010086:810890:811613811613812152540Burkholderia multivorans ATCC 17616 chromosome 2, completeNUMOD4 domain protein6e-0650.4