Pre_GI: BLASTP Hits

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Query: NC_013199:845000:850121 Lactobacillus rhamnosus Lc 705, complete genome

Start: 850121, End: 850996, Length: 876

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013198:1095591:111129111112911112166876Lactobacillus rhamnosus GG, complete genomeRecT protein7e-151533
NC_014554:2159782:217425821742582175157900Lactobacillus plantarum subsp. plantarum ST-III chromosome,recombination protein RecT7e-85313
NC_015428:1483768:150039815003981501345948Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeRecT protein2e-78292
NC_016052:842762:848325848325849290966Tetragenococcus halophilus NBRC 12172, complete genomeputative RecT protein1e-71269
NC_010609:880196:885352885352886281930Lactobacillus reuteri JCM 1112, complete genomehypothetical protein9e-64243
NC_009513:870837:875993875993876922930Lactobacillus reuteri F275, complete genomeRecT protein9e-64243
NC_010610:755000:7667607667607677881029Lactobacillus fermentum IFO 3956, complete genomehypothetical protein2e-60233
NC_015558:1425271:144215114421511443086936Streptococcus parauberis KCTC 11537 chromosome, complete genomehypothetical protein1e-58226
NC_009513:1184000:119456111945611195550990Lactobacillus reuteri F275, complete genomeRecT protein7e-57220
NC_021182:2536000:254221125422112543161951Clostridium pasteurianum BC1, complete genomerecombinational DNA repair protein (RecE pathway)2e-43176
NC_009617:1897887:190585519058551906775921Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeRecT protein3e-43175
NC_017351:643674:651432651432652352921Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerecombinase, phage RecT family protein2e-38159
NC_017351:2074000:210307321030732103993921Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerecombinase, phage RecT family protein2e-38159
NC_017338:2034698:206934620693462070266921Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeputative phage-related DNA recombination protein2e-38159
NC_010079:2102856:211736821173682118288921Staphylococcus aureus subsp. aureus USA300_TCH1516, completepossible recombination protein RecT2e-38159
NC_002758:2101137:211521621152162116136921Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-38159
NC_017341:2127815:214754621475462148466921Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative phage-related DNA recombination protein3e-38158
NC_009487:362475:369884369884370804921Staphylococcus aureus subsp. aureus JH9 chromosome, completeRecT protein5e-33141
NC_009632:361229:369954369954370874921Staphylococcus aureus subsp. aureus JH1 chromosome, completeRecT protein5e-33141
NC_009487:2148316:216030921603092161229921Staphylococcus aureus subsp. aureus JH9 chromosome, completeRecT protein5e-33141
NC_009632:2148767:216018321601832161103921Staphylococcus aureus subsp. aureus JH1 chromosome, completeRecT protein5e-33141
NC_008571:2582674:259642225964222597363942Gramella forsetii KT0803, complete genomeRecT family protein6e-29128
CP002185:1493280:150252315025231503332810Escherichia coli W, complete genomeRac prophage; recombination and repair protein4e-0962.4
NC_010473:1493983:150140415014041502213810Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage; recombination and repair protein4e-0962.4
CP002516:2580774:260251826025182603327810Escherichia coli KO11, complete genomeRecT protein4e-0962.4
NC_000913:1404000:141200814120081412817810Escherichia coli K12, complete genomeRac prophage; recombination and repair protein4e-0962.4
AC_000091:1407693:141569814156981416507810Escherichia coli W3110 DNA, complete genomerecombination and repair protein4e-0962.4
NC_011415:1472500:147741214774121478221810Escherichia coli SE11 chromosome, complete genomerecombination and repair protein RecT4e-0962.4
NC_012759:1296000:130406713040671304876810Escherichia coli BW2952 chromosome, complete genomerecombination and repair protein RecT4e-0962.4
NC_012947:2366000:238242123824212383230810Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completerecombination and repair protein RecT4e-0962.4
NC_012967:1403733:141115414111541411963810Escherichia coli B str. REL606 chromosome, complete genomerecombination and repair protein RecT4e-0962.4
NC_016902:2580774:260251826025182603327810Escherichia coli KO11FL chromosome, complete genomeRecT protein4e-0962.4
NC_002655:2142587:216290221629022163711810Escherichia coli O157:H7 EDL933, complete genomerecombinase, DNA renaturation protein encoded by prophage CP-933R5e-0962
NC_011205:1345511:135360813536081354438831Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853recombination and repair protein RecT7e-0961.2
NC_020134:420500:426773426773427588816Clostridium stercorarium subsp. stercorarium DSM 8532, completeprotein RecT1e-0860.5
NC_016831:1734292:175921117592111760041831Salmonella enterica subsp. enterica serovar Gallinarum/pullorumphage recombination protein2e-0860.1
NC_002927:2338549:234097023409702341956987Bordetella bronchiseptica RB50, complete genomephage-related DNA recombination protein9e-0857.8
NC_009699:2733529:273431327343132735116804Clostridium botulinum F str. Langeland chromosome, complete genomerecombinase1e-0757
NC_009495:2685646:268643026864302687233804Clostridium botulinum A str. ATCC 3502 chromosome, complete genomerecombinase, phage RecT family2e-0757
NC_014915:2963500:299691029969102997755846Geobacillus sp. Y412MC52 chromosome, complete genomeRecT protein1e-0654.3
NC_013411:597235:606180606180607025846Geobacillus sp. Y412MC61, complete genomeRecT protein1e-0654.3