Pre_GI: BLASTN Hits

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Query: NC_013198:2088780 Lactobacillus rhamnosus GG, complete genome

Start: 2088780, End: 2119352, Length: 30573

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013199:2058857*2058857209031631460Lactobacillus rhamnosus Lc 705, complete genome016800BLASTN svgBLASTP svg
NC_013198:1030970*1030970105037019401Lactobacillus rhamnosus GG, complete genome03130BLASTN svgBLASTP svg
NC_013198:51179551179553527023476Lactobacillus rhamnosus GG, complete genome03124BLASTN svgBLASTP svg
NC_013198:394000*39400046795873959Lactobacillus rhamnosus GG, complete genome03021BLASTN svgBLASTP svg
NC_013198:1538792*1538792157448935698Lactobacillus rhamnosus GG, complete genome03021BLASTN svgBLASTP svg
NC_014334:19543331954333198420029868Lactobacillus casei str. Zhang chromosome, complete genome02208BLASTN svgBLASTP svg
NC_010999:21557142155714218202826315Lactobacillus casei, complete genome02127BLASTN svgBLASTP svg
NC_008526:19735001973500199344619947Lactobacillus casei ATCC 334, complete genome0688BLASTN svgBLASTP svg
NC_007929:16372611637261165608018820Lactobacillus salivarius subsp. salivarius UCC118, complete genome1e-21113BLASTN svgBLASTP svg
NC_004567:10667101066710108627219563Lactobacillus plantarum WCFS1, complete genome4e-18101BLASTN svgBLASTP svg
NC_010610:10750010750013485227353Lactobacillus fermentum IFO 3956, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_008525:60698660698663027323288Pediococcus pentosaceus ATCC 25745, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012984:10747211074721110359928879Lactobacillus plantarum JDM1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008343:88184*8818411285024667Granulibacter bethesdensis CGDNIH1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007951:74050074050076287822379Burkholderia xenovorans LB400 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_005139:30542030542033120425785Vibrio vulnificus YJ016 chromosome I, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_015424:16895001689500172544435945Aeromonas veronii B565 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg