Pre_GI: BLASTN Hits

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Query: NC_012947:3947238 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete

Start: 3947238, End: 3966072, Length: 18835

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolation: Derivative of E. coli strain B; Temp: Mesophile; Temp: 37 C; Habitat: Host, Human intestinal microflora. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome020130BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome0686BLASTN svgBLASTP svg
NC_012880:4117376*4117376413569218317Dickeya dadantii Ech703, complete genome0817BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome0858BLASTN svgBLASTP svg
NC_015061:4203767*4203767424223938473Rahnella sp. Y9602 chromosome, complete genome0914BLASTN svgBLASTP svg
NC_020211:554736*55473659042335688Serratia marcescens WW4, complete genome0961BLASTN svgBLASTP svg
NC_012912:4194821*4194821421439319573Dickeya zeae Ech1591, complete genome0963BLASTN svgBLASTP svg
NC_014500:443874*44387446959925726Dickeya dadantii 3937 chromosome, complete genome01019BLASTN svgBLASTP svg
NC_020063:41704644170464419392123458Enterobacteriaceae bacterium strain FGI 57, complete genome01366BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome020130BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome019030BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome018820BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome016510BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome015490BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome03648BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-134488BLASTN svgBLASTP svg
NC_015968:511282*51128254179030509Enterobacter asburiae LF7a chromosome, complete genome1e-118434BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome2e-102381BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome2e-102381BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome2e-102381BLASTN svgBLASTP svg
NC_009092:1047500*1047500107272925230Shewanella loihica PV-4, complete genome1e-72281BLASTN svgBLASTP svg
NC_006905:17660001766000178860222603Salmonella enterica subsp. enterica serovar Choleraesuis str7e-28133BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-25125BLASTN svgBLASTP svg
NC_011080:17500001750000177244622447Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-25125BLASTN svgBLASTP svg
NC_006511:12731621273162129663123470Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-25125BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-25125BLASTN svgBLASTP svg
NC_003197:17536631753663177609922437Salmonella typhimurium LT2, complete genome2e-25125BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-23119BLASTN svgBLASTP svg
NC_008463:1223012*1223012124137318362Pseudomonas aeruginosa UCBPP-PA14, complete genome7e-22113BLASTN svgBLASTP svg
NC_011770:1226923*1226923124809921177Pseudomonas aeruginosa LESB58, complete genome3e-21111BLASTN svgBLASTP svg
NC_004631:16235111623511164614622636Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-20109BLASTN svgBLASTP svg
NC_003198:13368941336894136036523472Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-20109BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome4e-20107BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome4e-20107BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome4e-20107BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome4e-20107BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome2e-19105BLASTN svgBLASTP svg
NC_002516:4285477*4285477430981124335Pseudomonas aeruginosa PAO1, complete genome6e-19103BLASTN svgBLASTP svg
NC_012559:1228280*1228280127461346334Laribacter hongkongensis HLHK9, complete genome3e-18101BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002977:2254440*2254440228000425565Methylococcus capsulatus str. Bath, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_015424:4251369*4251369427627324905Aeromonas veronii B565 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015379:42492384249238427562626389Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,9e-1279.8BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_003116:93576*9357612141127836Neisseria meningitidis Z2491, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome4e-1177.8BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome4e-1177.8BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome4e-1177.8BLASTN svgBLASTP svg
AP010958:92293792293795098628050Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-1177.8BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014752:98117*9811712709928983Neisseria lactamica ST-640, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014733:107394*10739413952432131Methylovorus sp. MP688 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011751:39842363984236400841624181Escherichia coli UMN026 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010120:2029880*2029880205559925720Neisseria meningitidis 053442, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_008767:136958*13695816389726940Neisseria meningitidis FAM18, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011992:37528673752867377559922733Acidovorax ebreus TPSY, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_014228:4360676*4360676438499224317Xenorhabdus nematophila ATCC 19061, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015677:3339181*3339181336388124701Ramlibacter tataouinensis TTB310 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_014033:1664500*1664500169180627307Prevotella ruminicola 23 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_005085:2869159*2869159289234223184Chromobacterium violaceum ATCC 12472, complete genome2e-0971.9BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008781:3365468*3365468340127235805Polaromonas naphthalenivorans CJ2, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015731:25493*254935177226280Nitrosomonas sp. Is79A3 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_012559:10648211064821109367428854Laribacter hongkongensis HLHK9, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003112:149593*14959317620526613Neisseria meningitidis MC58, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome2e-0661.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome2e-0661.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0661.9BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020134:2295092*2295092231709922008Clostridium stercorarium subsp. stercorarium DSM 8532, complete2e-0661.9BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome9e-0660BLASTN svgBLASTP svg
NC_015436:474710*47471050587231163Spirochaeta coccoides DSM 17374 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_013421:80154280154282369422153Pectobacterium wasabiae WPP163, complete genome9e-0660BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome9e-0660BLASTN svgBLASTP svg